Job Description P39172 Confidence 100.00% Date Thu Jan 5 11:58:20 GMT 2012 Rank 5 Aligned Residues 267 % Identity 21% Template c1toaA_ PDB info PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	A	V	V	A	S	L	K	P	V	G	F	I	A	S	A	I	A	D	G	V	T	E	T	E	V	L	L	P	D	G	A	S	E	H	D	Y	S	L	R	P	S	D	V	K	R	L	Q	N	A	D	L	V	V	W	V	G	P	E	M	E	A	F	M	Q	K	P	V	S	K	L	P	G	A	K	Q	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	P	L	V	V	T	T	I	G	M	I	A	D	A	V	K	N	I	A	Q	G	D	V	H	L	K	G	L	M	G	P	G	V	D	P	H	L	Y	T	A	T	A	G	D	V	E	W	L	G	N	A	D	L	I	L	Y	N	G	L	H	L	E	T	K	M	G	E	V	F	S	K	L	R	G	S	R	L	V	V
Template Known Secondary structure									S	S												G	G	G	S					S			T	T			T	T	T															S							T	T		S	T	T									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	Q	L	E	D	V	K	P	L	L	M	K	S	I	H	G	D	D	D	D	H	D	H	A	E	K	S	D	E	D	H	H	H	G	D	F	N	M	H	L	W	L	S	P	E	I	A	R	A	T	A	V	A	I	H	G	K	L	V	E	L	M	P	Q	S	R	A	K	L	D	A	N	L	K	D	F	E	A	Q
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	P	V	S	Q	R	L	S	L	E	E	A	E	F	D	P	H	V	W	F	D	V	K	L	W	S	Y	S	V	K	A	V	Y	E	S	L	C	K	L	L	P	G	K	T	R	E	F	T	Q	R	Y	Q	A	Y	Q	Q	Q
Template Known Secondary structure			G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S		G	G	G	S		B	S	T	T	S		B				G	G	G	S																				G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.																			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		L	A	S	T	E	T	Q	V	G	N	E	L	A	.	.	P	L	K	G	K	G	Y	F	V	F	H	D	A	Y	G	Y	F	E	K	Q	F	G	L	T	P	L	G	H	F	T	V	N	P	E	I	Q	P	G	A	Q	R	L	H	E	I	R	T	Q	L	V	E	Q	K	A	T	C	V	F	A	E	P	Q	F	R	P
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		L	D	K	L	D	A	Y	V	R	R	K	A	Q	S	L	P	A	E	R	R	V	L	V	T	A	H	D	A	F	G	Y	F	S	R	A	Y	G	F	E	V	K	G	L	Q	G	V	S	T	A	S	E	A	S	A	H	D	M	Q	E	L	A	A	F	I	A	Q	R	K	L	P	A	I	F	I	E	S	S	I	P	H
Template Known Secondary structure															T	S		G	G	G								S										T									S	S		S	S																	T	T		S						T	T	S		T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.								.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		A	V	V	E	S	V	A	R	G	T	S	V	R	M	G	T	L	D	P	L	G	.	.	.	.	.	.	.	T	N	I	K	L	G	K	T	S	Y	S	E	F	L	S	Q	L	A	N	Q	Y	A	S	C	L	K
Query Conservation																							.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	V	E	A	L	R	D	A	V	Q	A	R	G	H	V	V	Q	I	G	G	E	L	F	S	D	A	M	G	D	A	G	T	S	E	G	T	Y	V	G	M	V	T	H	N	I	D	T	I	V	A	A	L	A
Template Known Secondary structure													T	T	T											S	S	S				T	T	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions