Job Description P09147 Confidence 99.34% Date Thu Jan 5 11:01:57 GMT 2012 Rank 85 Aligned Residues 172 % Identity 16% Template c3ew7A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo0794 protein; PDBTitle: crystal structure of the lmo0794 protein from listeria2 monocytogenes. northeast structural genomics consortium3 target lmr162. Resolution 2.73 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	V	L	V	T	G	G	S	G	Y	I	G	S	H	T	C	V	Q	L	L	Q	N	G	H	D	V	I	I	L	D	N	L	C	N	S	K	R	S	V	L	P	V	I	E	R	L	G	G	K	H	P	T	F	V	E	G	D	I	R	N	E	A	L	M	T	E	I	L	H	D	H	A	I	D	T	V	I	H	F
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		X	K	I	G	I	I	G	A	T	G	R	A	G	S	R	I	L	E	E	A	K	N	R	G	H	E	V	T	A	I	V	R	N	A	G	K	I	T	Q	T	.	.	.	.	.	.	.	.	.	.	H	K	D	I	N	I	L	Q	K	D	I	F	D	L	T	L	S	D	L	S	D	Q	N	V	V	V	D	A	Y	G
Template Known Secondary structure								T	T	T	S													T	T								S		S							.	.	.	.	.	.	.	.	.	.		S	S	S							G	G	G							T	T		S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40											.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	K	A	V	G	E	S	V	Q	K	P	L	E	Y	Y	D	N	N	V	N	G	T	L	R	L	I	S	A	M	R	A	A	N	V	K	N	F	I	F	S	S	S	A	T	V	Y	G	D	Q	P	K	I	P	Y	V	E	S	F	P	T	G	T	P	Q	S	P	Y	G	K	S	K	L	M	V	E	Q	I	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	P	D	E	A	E	K	.	.	.	.	.	.	.	.	.	.	.	H	V	T	S	L	D	H	L	I	S	V	L	N	G	T	V	S	P	R	L	L	V	V	G	G	A	A	A	P	Y	Y	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	A	Q	A	K	Q	L
Template Known Secondary structure		S	S	T	T	T	T	T	S	.	.	.	.	.	.	.	.	.	.	.														S			S	S													S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.												.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.																					.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	L	Q	K	A	Q	P	D	W	S	I	A	L	L	R	Y	F	N	P	V	G	A	H	P	S	G	D	M	G	E	D	P	Q	G	I	P	N	N	L	M	P	Y	I	A	Q	V	A	V	G	R	R	D	S	L	A	I	F	G	N	D	Y	P	T	E	D	G	T	G	V	R	D	Y	I	H	V	M	D	L	A
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	H	L	K	S	H	Q	A	E	F	S	W	T	Y	I	S	P	S	A	X	F	E	P	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	X	E	D	Y	A
Template Known Secondary structure						T	T	T	T	T	S								S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																																																	.	.	.	.	.	.	170
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	V	V	A	M	E	K	L	A	N	K	P	G	V	H	I	Y	N	L	G	A
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		I	A	V	L	D	E	I	E	R	P	.	.	N	H	L	N	E	H	F	T	V	A	G
Template Known Secondary structure										S		.	.	S		T	T	S
Template Predicted Secondary structure												.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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