Job Description P09147 Confidence 100.00% Date Thu Jan 5 11:01:57 GMT 2012 Rank 33 Aligned Residues 293 % Identity 24% Template c2q1wC_ PDB info PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ Resolution 2.19 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	R	.	V	L	V	T	G	G	S	G	Y	I	G	S	H	T	C	V	Q	L	L	Q	N	G	H	D	V	I	I	L	D	N	L	C	N	S	K	R	S	V	L	P	V	I	E	R	L	G	G	K	H	P	T	F	V	E	G	D	I	R	N	E	A	L	M	T	E	I	L	H	D	H	A	I	D	T	V	I	H
Query Conservation				.
Alig confidence				.																																									.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		M	K	K	V	F	I	T	G	I	C	G	Q	I	G	S	H	I	A	E	L	L	L	E	R	G	D	K	V	V	G	I	D	N	F	A	T	G	R	R	E	H	L	K	.	.	.	.	.	D	H	P	N	L	T	F	V	E	G	S	I	A	D	H	A	L	V	N	Q	L	I	G	D	L	Q	P	D	A	V	V	H
Template Known Secondary structure									T	T	T	S													T	T										S	S			G	G	G	S		.	.	.	.	.			T	T								T	T															S
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.						.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	G	L	K	A	V	G	E	S	V	Q	K	P	L	E	Y	Y	D	N	N	V	N	G	T	L	R	L	I	S	A	M	R	A	A	N	V	K	N	F	I	F	S	S	S	A	T	V	Y	G	D	Q	P	K	I	P	Y	V	E	S	F	P	T	G	T	P	Q	S	P	Y	G	K	S	K	L	M	V	E	Q	I
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence		T	A	A	S	Y	K	D	.	.	.	P	D	D	W	Y	N	D	T	L	T	N	C	V	G	G	S	N	V	V	Q	A	A	K	K	N	N	V	G	R	F	V	Y	F	Q	T	A	L	C	Y	G	V	K	P	I	Q	Q	P	V	R	L	D	H	P	R	N	P	A	N	S	S	Y	A	I	S	K	S	A	N	E	D
Template Known Secondary structure							S		.	.	.	T	T										T													T	T		S								G	G	G	G		S	S		S	S	S	S	B		T	T						T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		76	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	D	L	Q	K	A	Q	P	D	W	S	I	A	L	L	R	Y	F	N	P	V	G	A	H	P	S	G	D	M	G	E	D	P	Q	G	I	P	N	N	L	M	P	Y	I	A	Q	V	A	V	G	R	R	D	S	L	A	I	F	G	N	D	Y	P	T	E	D	G	T	G	V	R	D	Y	I	H	V	M	D	L
Query Conservation
Alig confidence							.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	E	Y	S	.	.	.	.	G	L	D	F	V	T	F	R	L	A	N	V	V	G	P	R	N	.	.	.	.	.	.	.	.	.	.	.	.	S	G	P	L	P	I	F	F	Q	R	L	S	E	G	K	K	C	F	V	T	.	.	.	.	.	.	.	.	.	.	K	A	R	R	D	F	V	F	V	K	D	L
Template Known Secondary structure							.	.	.	.										S				S	T	T		.	.	.	.	.	.	.	.	.	.	.	.													T	T							.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure							.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.													.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.											.	.	.	.	.	200	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	G	H	V	V	A	M	E	K	L	A	N	K	P	G	V	H	I	Y	N	L	G	A	G	V	G	N	S	V	L	D	V	V	N	A	F	S	K	A	C	G	K	P	V	N	Y	H	F	A	P	R	R	E	G	D	L	P	A	Y	W	A	D	A	S	K	A	D	R	E	L	N	W	R	V	T	R	T	L	D
Query Conservation
Alig confidence																.	.	.	.																																			.
Template Conservation																.	.	.	.																																			.
Template Sequence		A	R	A	T	V	R	A	V	D	G	V	G	H	G	.	.	.	.	A	Y	H	F	S	S	G	T	D	V	A	I	K	E	L	Y	D	A	V	V	E	A	M	A	L	P	S	Y	P	E	P	E	I	R	.	E	L	G	A	P	S	I	L	L	D	P	S	R	T	I	Q	D	F	G	K	I	E	F	T	P	L	K
Template Known Secondary structure										T	T					.	.	.	.					S		S																	T		S									.						B			B											S
Template Predicted Secondary structure																.	.	.	.																																			.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	Q	D	T	W	H	W	Q	S	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	V	A	A	A	V	A	Y	F	R	E	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions