Return to main results Retrieve Phyre Job Id

Job DescriptionQ57154
Confidence48.39%DateThu Jan 5 12:37:14 GMT 2012
Rank30Aligned Residues48
% Identity13%Templated2g9wa1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   215....220.........230.........240.........250.........260.........
Predicted Secondary structure 

















Query SS confidence 






















































Query Sequence  RDPAPISLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKFFC
Query Conservation    
 


  





 
 
    

  







  



     
        
Alig confidence 























..














.....








Template Conservation        
  

 
 
        
..

 
 
 

  

 
.....  

   
 
Template Sequence  SRTEPQTVRQVHEALSARRDLAYT. . TVXAVLQRLAKKNLV. . . . . LQIRAHRYA
Template Known Secondary structure  T
SS
TTT



..TTS.....


Template Predicted Secondary structure 











..

.....


Template SS confidence 






















































   20.........30.........40... ......50........ .60.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions