Job Description Q57154 Confidence 99.35% Date Thu Jan 5 12:37:14 GMT 2012 Rank 1 Aligned Residues 185 % Identity 15% Template c2z9oB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:replication initiation protein; PDBTitle: crystal structure of the dimeric form of repe in complex with the repe2 operator dna Resolution 3.14 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		N	D	F	K	T	W	V	G	I	I	H	S	F	A	R	H	N	V	I	G	D	K	V	E	L	P	F	V	E	F	A	K	L	C	G	I	P	S	S	Q	S	S	R	R	L	R	E	R	I	S	P	S	L	K	R	I	A	G	T	V	I	S	F	.	.	.	S	R	T	D	E	K	H	T	R	E	Y	I	T	H
Query Conservation																																																																	.	.	.
Alig confidence															.	.	.	.	.	.																			.	.	.	.																							.	.	.
Template Conservation															.	.	.	.	.	.																			.	.	.	.
Template Sequence		D	Q	K	R	M	L	Y	L	F	V	D	Q	I	.	.	.	.	.	.	D	G	I	C	E	I	H	V	A	K	Y	A	E	I	F	G	L	T	.	.	.	.	S	A	E	A	S	K	D	I	R	Q	A	L	K	S	F	A	G	K	E	V	V	F	Y	R	P	E	E	D	A	G	D	E	K	G	Y	E	S	F	P
Template Known Secondary structure															.	.	.	.	.	.															T	T			.	.	.	.																T	T	S												T	T
Template Predicted Secondary structure															.	.	.	.	.	.																			.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.							.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.																																					.	.	.	.
Query SS confidence																														.	.																																					.	.	.	.
Query Sequence		L	V	Q	S	A	Y	Y	D	T	E	R	D	I	V	Q	L	Q	A	D	P	R	L	F	E	L	Y	Q	F	.	.	D	R	K	V	L	L	Q	L	K	A	I	N	A	L	K	R	R	E	S	A	Q	A	L	Y	T	F	I	E	S	L	P	R	D	P	A	P	.	.	.	.	I	S	L	A	R	L	R	A	R	L
Query Conservation																														.	.																																					.	.	.	.
Alig confidence																														.	.																		.																			.	.	.	.
Template Conservation																																																	.
Template Sequence		W	F	I	K	R	A	H	S	P	S	R	G	L	Y	S	V	H	I	N	P	Y	L	I	P	F	F	I	G	L	Q	N	R	F	T	Q	F	R	L	S	E	T	K	E	I	T	N	P	.	Y	A	M	R	L	Y	E	S	L	C	Q	Y	R	K	P	D	G	S	G	I	V	S	L	K	I	D	W	I	I	E	R	Y
Template Known Secondary structure		S								G	G	G									T	T	T																G	G	G								.										G	G	G			S	S	S								T	T					T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		230	.	.	.				.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.
Predicted Secondary structure						.	.	.								.																.	.													.	.	.
Query SS confidence						.	.	.								.																.	.													.	.	.
Query Sequence		N	L	K	S	.	.	.	P	V	F	S	Q	N	Q	.	T	V	R	R	A	M	E	Q	L	R	E	I	G	Y	L	.	.	D	Y	T	E	I	Q	R	G	R	T	K	F	.	.	.	F	C	I	H	Y	R	R
Query Conservation						.	.	.								.																.	.													.	.	.
Alig confidence						.	.	.								.																.	.													.	.	.
Template Conservation
Template Sequence		Q	L	P	Q	S	Y	Q	R	M	P	D	F	R	R	R	F	L	Q	V	C	V	N	E	I	N	S	R	T	P	M	R	L	S	Y	I	E	K	K	K	G	R	Q	T	T	H	I	V	F	S	F	R	D	I	T
Template Known Secondary structure		T			G	G	G	S	S								T										T	T	S	S				B							T	T												S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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