Job Description Q57154 Confidence 99.22% Date Thu Jan 5 12:37:14 GMT 2012 Rank 2 Aligned Residues 189 % Identity 14% Template c2nraC_ PDB info PDB header:replication/dna Chain: C: PDB Molecule:pi protein; PDBTitle: crystal structure of pi initiator protein in complex with iteron dna Resolution 3.10 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.							.	.	.	.	150
Predicted Secondary structure																			.	.																																																			.	.	.	.	.	.
Query SS confidence																			.	.																																																			.	.	.	.	.	.
Query Sequence		N	D	F	K	T	W	V	G	I	I	H	S	F	A	R	H	N	.	.	V	I	G	D	K	V	E	L	P	F	V	E	F	A	K	L	C	G	I	P	S	S	Q	S	S	R	R	L	R	E	R	I	S	P	S	L	K	R	I	A	G	T	V	I	S	F	S	R	T	D	.	.	.	.	.	.	E	K	H	T	R
Query Conservation																			.	.																																																			.	.	.	.	.	.
Alig confidence																			.	.																					.	.	.	.																											.	.	.	.	.	.
Template Conservation																																									.	.	.	.
Template Sequence		P	A	K	R	V	M	Y	M	A	L	A	L	I	D	S	K	E	P	L	E	R	G	R	V	F	K	I	R	A	E	D	L	A	A	L	A	K	I	T	.	.	.	.	P	S	L	A	Y	R	Q	L	K	E	G	G	K	L	L	G	A	S	K	I	S	L	R	G	D	D	I	I	A	L	A	K	E	L	N	S	E
Template Known Secondary structure													T	S		T	T	S				S	S															T			.	.	.	.																			B					S	S									T
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.						.	.	220
Predicted Secondary structure																																			.	.	.	.	.																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.																																			.	.	.	.	.
Query Sequence		E	Y	I	T	H	L	V	Q	S	A	Y	Y	D	T	E	R	D	I	V	Q	L	Q	A	D	P	R	L	F	E	L	Y	Q	F	.	.	.	.	.	D	R	K	V	L	L	Q	L	K	A	I	N	A	L	K	R	R	E	S	A	Q	A	L	Y	T	F	I	E	S	L	P	R	D	P	.	.	.	.	.	A	P	I
Query Conservation																																			.	.	.	.	.																																			.	.	.	.	.
Alig confidence																																			.	.	.	.	.																		.																	.	.	.	.	.
Template Conservation																																																									.
Template Sequence		E	L	D	L	N	I	I	E	W	I	A	Y	S	P	D	E	G	Y	L	S	L	K	F	T	R	T	I	E	P	Y	I	S	S	L	I	G	K	K	N	K	F	T	T	Q	L	L	T	A	S	L	R	L	S	S	Q	.	Y	S	S	S	L	Y	Q	L	I	R	K	H	Y	S	N	F	K	K	K	N	Y	F	I	I
Template Known Secondary structure						B	S								T	T	T	T								T	T	T	G	G	G	S	S			S		S	G	G	G																.												T				S	S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.													.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.									.																.	.						.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.									.																.	.						.	.
Query Sequence		S	L	A	R	L	R	A	R	L	N	L	K	.	.	.	.	.	.	.	.	.	.	.	.	S	P	V	F	S	Q	N	Q	.	T	V	R	R	A	M	E	Q	L	R	E	I	G	Y	L	.	.	D	Y	T	E	I	.	.	Q	R	G	R	T	K	F	F	C	I	H	Y
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.									.																.	.						.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.									.																.	.						.	.
Template Conservation
Template Sequence		S	V	D	E	L	K	E	E	L	I	A	Y	T	F	D	K	D	G	N	I	E	Y	K	Y	P	D	F	P	I	F	K	R	D	V	L	N	K	A	I	A	E	I	K	K	K	T	E	I	S	F	V	G	F	T	V	H	E	K	E	G	R	K	I	S	K	L	K	F	E
Template Known Secondary structure											T						S	S	S	S				S	S		S								T												S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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