Job Description P15005 Confidence 99.67% Date Thu Jan 5 11:34:08 GMT 2012 Rank 13 Aligned Residues 187 % Identity 18% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	F	N	S	G	K	S	V	I	P	P	M	S	K	T	E	S	Y	C	L	E	D	A	L	N	D	L	F	I	P	E	T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		S	A	I	L	S	E	K	P	N	V	K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	.	.	.	.	.	.	.	S	T
Template Known Secondary structure			S	S									S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.								.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.															.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.															.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		F	F	S	V	S	S	S	D	L	V	S	K	W	M	G	E	S	.	.	.	.	.	.	.	.	.	.	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	.	.	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	.	.	.	.	.	.	.	.	.	G	E	G	E	S	E	A	S	R	R	I
Template Known Secondary structure											T	T	T	S	S	S	S		.	.	.	.	.	.	.	.	.	.	T	T	T										T	T	.	.	S	S							S	G	G	G	G					.	.	.	.	.	.	.	.	.	S	S	S	S	S	S	S	S	S	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.															.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210											.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.										.	.	.	.	.	.	.	.	250	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V	V	D	Y	A	L	R	R	R	F	S	F	.	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F
Query Conservation																																														.
Alig confidence																															.	.	.	.												.
Template Conservation																															.	.	.	.
Template Sequence		K	T	E	L	L	V	Q	M	N	G	V	G	N	D	S	Q	G	V	L	V	L	G	A	T	N	I	P	W	Q	.	.	.	.	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	T	M	F
Template Known Secondary structure									T	T	S	T	T	T	T	S		S								S			T	T	.	.	.	.	S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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