Job Description P15005 Confidence 98.95% Date Thu Jan 5 11:34:08 GMT 2012 Rank 85 Aligned Residues 215 % Identity 16% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E
Template Known Secondary structure												T	S		S								T	T	S	S																S							S	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	.	.	.	S
Query Conservation																																																																														.	.	.
Alig confidence							.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation							.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	D	Q	G	.	.	.	.	.	.	.	.	T	L	F	L	D	E	V	G	E	L	D	Q	R	.	V	Q	A	K	L	L	R	V	L	E	T	G	S	.	.	.	.	.	.	.	.	.	.	.	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K
Template Known Secondary structure			T	T	T	S	.	.	.	.	.	.	.	.						T	G	G	G	S				.												S		.	.	.	.	.	.	.	.	.	.	.				B	T																S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.												.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																				.																																																.
Query SS confidence																				.																																																.
Query Sequence		L	A	V	V	D	Y	A	L	R	R	R	F	S	F	I	D	I	E	.	P	G	F	D	T	P	Q	F	R	N	F	L	L	N	K	K	A	E	P	S	F	V	E	S	L	C	Q	K	M	N	E	L	N	Q	E	I	S	K	E	A	T	I	L	G	K	G	F	.	R	I	G	H	S	Y	F	C	C	G	L	E	D
Query Conservation																				.																																																.
Alig confidence																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q
Template Known Secondary structure		T	T	S	S									T	S								G	G	G	S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T						B										T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	S	P	D	T	Q	W	L	N	E	I	V	M	T	D	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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