Job Description P15005 Confidence 99.75% Date Thu Jan 5 11:34:08 GMT 2012 Rank 6 Aligned Residues 180 % Identity 19% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		V	I	P	P	M	S	K	T	E	S	Y	C	L	E	D	A	L	N	D	L	F	I	P	E	T	T	I	E	T	I	L	K	R	.	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y
Query Conservation																																			.
Alig confidence																																			.																														.	.	.	.	.	.	.							.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	.	.	.	.	.	.	.	A	N	F	I	S	I	.	.	.	.
Template Known Secondary structure				T	T	T	T		S																								T	S						S								T	T	S													T	T	.	.	.	.	.	.	.							.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.								.	.	.	540	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D
Query Conservation
Alig confidence														.	.	.	.	.	.																.	.																	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.																.	.																	.	.	.	.	.	.	.
Template Sequence		K	G	P	E	L	L	T	M	W	F	G	E	.	.	.	.	.	.	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	.	.	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	.	.	.	.	.	.	.	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E
Template Known Secondary structure											T	T	T	.	.	.	.	.	.		T							T	T	T	T	T	T	T	.	.		S						S	S	G	G	G	G				.	.	.	.	.	.	.		T	T	T	T		S	S			S
Template Predicted Secondary structure														.	.	.	.	.	.																.	.																	.	.	.	.	.	.	.
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.							.	.	.	.	.	560	.	.	.	.	.	.	.	.	.			570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.								.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.				.
Query SS confidence																																		.	.				.
Query Sequence		E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V	V	D	Y	A	L	R	R	.	.	R	F	S	.	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F
Query Conservation																																		.	.				.
Alig confidence																							.	.	.	.								.	.				.
Template Conservation																							.	.	.	.
Template Sequence		M	D	G	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	P	D	I	.	.	.	.	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I	L
Template Known Secondary structure				S	S		T	T	S	S								S		G	G	G	.	.	.	.			G	G	G	T	S	T	T	T	S											T	T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.					.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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