Job Description P15005 Confidence 99.67% Date Thu Jan 5 11:34:08 GMT 2012 Rank 12 Aligned Residues 171 % Identity 25% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	N	S	G	K	S	V	I	P	P	M	S	K	T	E	S	Y	C	L	E	D	A	L	N	D	L	F	I	P	E	T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.
Template Sequence		I	V	I	E	R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	.	.	.	.	.	.	S	T	F	F
Template Known Secondary structure			B								G	G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.							.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	.	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P
Query Conservation																																																							.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.													.																						.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																																			.	.	.	.	.
Template Sequence		S	I	S	S	S	D	L	V	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	.	.	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	.	.	.	.	.
Template Known Secondary structure						S	T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T												T	.	.		S							S																				T	S	S	S			.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.																																			.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.																.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V	V	D	Y	A	L	R	R	R	F	S	F	.	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F
Query Conservation																																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	I	L	V	L	G	A	T	N	I	P	W	V	.	.	.	.	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S			T	T	.	.	.	.	S									S										S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
																270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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