Job Description P15005 Confidence 99.48% Date Thu Jan 5 11:34:08 GMT 2012 Rank 30 Aligned Residues 164 % Identity 19% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		S	K	T	E	S	Y	C	L	E	D	A	L	N	D	L	F	I	P	E	T	T	I	E	T	I	L	K	R	.	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F
Query Conservation																														.
Alig confidence																														.																														.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	G	.	.	.	.	.	.	.	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	T	.	.	.	.	.	.	.								T	T	T	T		S	S	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640								.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.															.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.															.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	E	S	.	.	.	.	.	.	.	.	.	.	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	.	.	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	G	L	E	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T				.	.	.	.	.	.	.	.	.	.														T	.	.		S							T		T	T	T				T	T											T			S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.															.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		656	.	.	.											660	.	.	.	.	.	.	.	.	.	670	.	.	.			.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V	V	D	Y	A	L	R	R	.	.	R	F	S	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F	L
Query Conservation																													.	.
Alig confidence		.	.															.	.	.	.								.	.
Template Conservation		.	.															.	.	.	.
Template Sequence		.	.	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	.	.	.	.	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	A	D	R	L	A	I	L
Template Known Secondary structure		.	.	T									S		G	G	G	.	.	.	.	S						S	T	T	S	S								S
Template Predicted Secondary structure		.	.															.	.	.	.
Template SS confidence
				716	.	.	.	720	.	.	.	.	.	.	.	.	.					730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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