Return to main results Retrieve Phyre Job Id

Job DescriptionP15005
Confidence97.91%DateThu Jan 5 11:34:08 GMT 2012
Rank120Aligned Residues39
% Identity28%Templatec2wjyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   179180.........190.........200.........210........
Predicted Secondary structure 











Query SS confidence 







































Query Sequence  IPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLL
Query Conservation              
     


 







 

  

  
Alig confidence 















.






















Template Conservation 

 

  

  

   .












 

  

  
Template Sequence  LNHSQVYAVKTVLQRP. LSLIQGPPGTGKTVTSATIVYHL
Template Known Secondary structure 

TSS.

TTS
Template Predicted Secondary structure 




.







Template SS confidence 







































   471........480...... ...490.........500.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions