Job Description P15005 Confidence 98.64% Date Thu Jan 5 11:34:08 GMT 2012 Rank 93 Aligned Residues 138 % Identity 16% Template c2gxaA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp Resolution 3.15 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N
Query Conservation
Alig confidence																																										.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	L	K	L	W	L	K	G	I	P	K	K	N	C	L	A	F	I	G	P	P	N	T	G	K	S	M	L	C	N	S	L	I	H	F	L	G	G	S	.	.	.	.	V	L	S	F	A	N	H	K	S	H	F	W	L	A	S	L	A	D	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T		T	T									S	S	S	S	S												T	T			.	.	.	.				T	T	S		T	T	S		T	T	S	G	G	G	T		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.					.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.																			.	.												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.																			.	.												.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	L	V	D	D	A	T	H	A	C	W	R	.	Y	F	D	T	Y	L	R	N	A	L	D	G	Y	.	.	.	.	.	P	V	S	I	D	R	K	H	K	A	A	V	Q	I	K	A	P	P	.	.	L	L	V	T	S	N	I	D	V	Q	A	.	.	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						S								.					T	T						S	S	.	.	.	.	.							S	S	S										.	.						S	S		T	T	T	.	.		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.														.														.	.	.	.	.																			.	.												.	.
Template SS confidence
															474	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.						500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.			.	.	520	.	.	.	.	.	.	.	.			.	530
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	Y	A	L	R	R	R	F	S	F	I	D	I	E	P	G	F	D	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	L	Y	L	H	S	R	V	Q	T	F	R	F	E	Q	P	C	T	D	E
Template Known Secondary structure		T	T					T	T								S
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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