Job Description P15005 Confidence 99.37% Date Thu Jan 5 11:34:08 GMT 2012 Rank 46 Aligned Residues 212 % Identity 18% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		E	T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	.	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F
Query Conservation																																														.
Alig confidence																																														.																									.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	.	.	.	.	.	.	H	P	G	R	F
Template Known Secondary structure												T	T	S		S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B					.	.	.	.	.	.	B
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	R	A	.	.	.	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	.	V	Q	E	K	L	L	R	V	I	E	Y	G	E	.	.	.	.	.	.	.	.	.	.	.	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	T	T	S						S	G	G	G	S				.												S		.	.	.	.	.	.	.	.	.	.	.					S	S	S														S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	L	A	V	V	D	Y	A	L	R	R	R	F	S	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F	L	L	N	K	K	A	E	P	S	F	V	E	S	L	C	Q	K	M	N	E	L	N	Q	E	I	S	K	E	A	T	I	L	G	K	G	F	R	I	G	H	S	Y	F	C	C	G	L	E	D
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	.	.	.	.	.	.	.	.	.	.	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	.	.	.	.	.	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y
Template Known Secondary structure					T	S	S										S								G	G	G	S				.	.	.	.	.	.	.	.	.	.																T	T	.	.	.	.	.		S	S				B											S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.											.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	S	P	D	T	Q	W	L	N	E	I	V	M	T	D	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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