Job Description P15005 Confidence 99.35% Date Thu Jan 5 11:34:08 GMT 2012 Rank 48 Aligned Residues 154 % Identity 18% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		L	N	D	L	F	I	P	E	T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	.	.	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G
Query Conservation																									.	.
Alig confidence																									.	.																																																		.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	.	.	.	.	.	.
Template Known Secondary structure		G	G	G			S		T												S											S	T	T	S	S														G	G	G										T	T	S			S						T			.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	H	F	A	Q	K	K	L	H	L	P	P	G	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	T	R	F	A	F	A
Template Known Secondary structure		.	.	.	.	.	.	.												T	T									S	G	G	G	S							T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.																								.	.	.	.	140	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	T	A	D	R	S	L	A	V	V	D	Y	A	L	R	R	R	F	S	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F
Query Conservation
Alig confidence								.	.	.	.
Template Conservation								.	.	.	.
Template Sequence		C	N	Q	S	N	K	.	.	.	.	I	I	E	P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	D	E	D	V	L	K	R	L
Template Known Secondary structure			S		G	G	G	.	.	.	.	S						T	T	S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		144	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions