Job Description P15005 Confidence 99.52% Date Thu Jan 5 11:34:08 GMT 2012 Rank 24 Aligned Residues 144 % Identity 22% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P
Query Conservation
Alig confidence																																	.	.	.	.	.					.	.	.	.	.	.													.	.	.	.	.	.																.
Template Conservation																																	.	.	.	.	.					.	.	.	.	.	.													.	.	.	.	.	.																.
Template Sequence		V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	G	A	F	.	.	.	.	.	F	F	L	I	.	.	.	.	.	.	N	G	P	E	I	M	S	K	L	A	G	E	.	.	.	.	.	.	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	.
Template Known Secondary structure													S	T	T	S	S													T			.	.	.	.	.					.	.	.	.	.	.							T	S		T	T		.	.	.	.	.	.															T	.
Template Predicted Secondary structure																																	.	.	.	.	.					.	.	.	.	.	.													.	.	.	.	.	.																.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.							270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V	V	D	Y	A	L	R	R	.	.
Query Conservation																																																																																.	.
Alig confidence		.																		.	.	.	.	.	.	.	.	.	.																																								.	.	.	.								.	.
Template Conservation		.																		.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template Sequence		.	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	.	.	.	.	.	.	.	.	.	.	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	.	.	.	.	I	D	P	A	L	R	R	F	G
Template Known Secondary structure		.		S							T	G	G	G	T				S	.	.	.	.	.	.	.	.	.	.	S	S				T	T																	G	G	G									S		G	G	G	.	.	.	.	S		G	G	G	T	S	T	T
Template Predicted Secondary structure		.																		.	.	.	.	.	.	.	.	.	.																																								.	.	.	.
Template SS confidence
			297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.											.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.
		349	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		R	F	S	.	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		R	F	D	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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