Job Description P15005 Confidence 99.34% Date Thu Jan 5 11:34:08 GMT 2012 Rank 51 Aligned Residues 213 % Identity 11% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	.	.	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	K	R	R	E	G	R	F
Template Known Secondary structure													S	T	T									T	T	S	S												S	S		S	S	S		.	.							T	T											T				S	S	S								T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	A	D	G	G	.	.	.	.	.	.	.	.	T	L	F	L	D	E	I	G	D	I	S	P	L	.	M	Q	V	R	L	L	R	A	I	Q	E	R	E	.	.	.	.	.	.	.	.	.	.	.	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V
Template Known Secondary structure		G	G	G	T	T	S	.	.	.	.	.	.	.	.							G	G	G					.											S	S		.	.	.	.	.	.	.	.	.	.	.				S	S	S															S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.									.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.												.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
					341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	V	D	Y	A	L	R	R	R	F	S	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F	L	L	N	K	K	A	E	P	S	F	V	E	S	L	C	Q	K	M	N	E	L	N	Q	E	I	S	K	E	A	T	I	L	G	K	G	F	R	I	G	H	S	Y	F	C	C	G	L	E	D	G
Query Conservation		.	.	.
Alig confidence		.	.	.																			.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		S	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	.	.	.	.	.	.	.	.	.	.	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	.	.	.	.	.	.	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D
Template Known Secondary structure				T	S	S										S							.	.	.	.	.	.	.	.	.	.		G	G	G	G	G	G	G																T	.	.	.	.	.	.	T						B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310											.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.							.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	P	D	T	Q	W	L	N	E	I	V	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	P	G	N	I	R	E	L	E	N	A	I	E	R
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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