Job Description P15005 Confidence 98.76% Date Thu Jan 5 11:34:08 GMT 2012 Rank 89 Aligned Residues 218 % Identity 19% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		T	T	I	E	T	I	L	K	R	L	T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	.	.	N	G	V	G	F	R	R	K	D	G	I	F
Query Conservation																																																																				.	.
Alig confidence																																																																				.	.
Template Conservation
Template Sequence		E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E	G	F	F
Template Known Secondary structure											T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	S	T	T			S		B
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	F	C	Q	Q	A	K	E	Q	P	E	K	K	Y	I	F	I	I	D	E	I	N	R	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		E	L	A	.	.	.	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	.	A	Q	A	K	L	L	R	V	I	E	S	G	K	.	.	.	.	.	.	.	.	.	.	.	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	.	.	.	.
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	T	T	S						S	G	G	G					.												S		.	.	.	.	.	.	.	.	.	.	.				B	T			S													S	S		.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																	.														.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		228	.	230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.												260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		A	V	V	D	Y	A	L	R	R	R	F	S	F	I	D	I	E	P	G	F	D	T	P	Q	F	R	N	F	L	L	N	K	K	A	E	P	S	F	V	E	S	L	C	Q	K	M	N	E	L	N	Q	E	I	S	K	E	A	T	I	L	G	K	G	F	.	R	I	G	H	S	Y	F	C	C	G	L	E	D	G	T
Query Conservation																																																																		.
Alig confidence		.	.									.	.	.	.	.	.	.	.																																															.
Template Conservation		.	.									.	.	.	.	.	.	.	.
Template Sequence		.	.	I	K	E	L	V	K	E	G	.	.	.	.	.	.	.	.	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W
Template Known Secondary structure		.	.							T	T	.	.	.	.	.	.	.	.	S	S									T	T								G	G	G																				T	T																	S
Template Predicted Secondary structure		.	.									.	.	.	.	.	.	.	.
Template SS confidence
				283	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	D	T	Q	W	L	N	E	I	V	M	T	D	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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