Job Description P15005 Confidence 99.47% Date Thu Jan 5 11:34:08 GMT 2012 Rank 31 Aligned Residues 153 % Identity 19% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	K	K	N	I	I	L	Q	G	P	P	G	V	G	K	T	F	V	A	R	R	L	A	Y	L	L	T	G	E	K	A	P	Q	R	V	N	M	V	Q	F	H	Q	S	Y	S	Y	E	D	F	I	Q	G	Y	R	P	N	G	V	G	F	R	R	K	D	G	I	F	Y	N	F	C	Q	Q	A	K	E	Q	P	E
Query Conservation
Alig confidence																														.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.															.	.
Template Conservation																														.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.															.	.
Template Sequence		T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	N	.	.	.	.	.	.	.	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K	.	.	.	.	.	.	.	.	.	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	.	.
Template Known Secondary structure			S									S	T	T	S	S														.	.	.	.	.	.	.		S							G	G	G	S	T	T							.	.	.	.	.	.	.	.	.													T	S	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.								.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.										.	.	.	.	.	.	.	.	590	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.										.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		K	K	Y	I	F	I	I	D	E	I	N	R	.	.	.	.	.	.	.	.	.	A	N	L	S	K	V	F	G	E	V	M	M	L	M	E	H	D	K	R	G	E	N	W	S	V	P	L	T	Y	S	E	N	D	E	E	R	F	Y	V	P	E	N	V	Y	I	I	G	L	M	N	T	A	D	R	S	L	A	V	V
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Sequence		Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	.	.	.	.	L
Template Known Secondary structure		S													T	T		B	T	T	T	T	B													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T										S					.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.																				.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.					.
		343	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure					.																	.	.
Query SS confidence					.																	.	.
Query Sequence		D	Y	A	.	L	R	R	R	F	S	F	I	D	I	E	P	G	F	D	T	.	.	P	Q	F	R	N	F	L	L	N	K	K	A	E	P	S	F	V	E	S	L	C	Q	K	M
Query Conservation					.																	.	.
Alig confidence					.																	.	.
Template Conservation
Template Sequence		Q	E	M	E	M	L	N	A	F	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	F	K	D	K	E	R	T	T	I	A	Q	Q	V
Template Known Secondary structure				T	T	G	G	G	T	S	S																						T		S
Template Predicted Secondary structure
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions