Job Description P75678 Confidence 99.07% Date Thu Jan 5 12:12:57 GMT 2012 Rank 218 Aligned Residues 167 % Identity 13% Template c3tw8B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35 Resolution 2.10 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	E	P	V	I	G	I	M	G	K	T	G	V	G	K	S	S	L	C	N	A	L	F	A	G	D	I	S	P	V	S	D	V	A	A	C	T	R	E	P	L	R	F	R	L	Q	V	G	D	R	Y	I	T	L	M	D	L	P	G	V	G	E	S	G	A	R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P
Query Conservation
Alig confidence																																.	.																																			.	.	.	.	.	.	.
Template Conservation																																.	.																																			.	.	.	.	.	.	.
Template Sequence		D	H	L	F	K	L	L	I	I	G	D	S	G	V	G	K	S	S	L	L	L	R	F	A	D	N	T	S	Y	I	.	.	T	T	I	G	V	D	F	K	I	R	T	V	E	I	N	G	E	K	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	.	.	.	.	.	.	.	I	T	S	T	Y	Y	R
Template Known Secondary structure													T	T	S											S					T	.	.	T	T	T	S											T	T											T	T	G	G	G		S	S	.	.	.	.	.	.	.			G	G	G	G	T
Template Predicted Secondary structure																																.	.																																			.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.								70	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		R	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	T	V	D	E	H	F	Y	H	Q	V	I	G	E	V	Y	R	.	H	K	V	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	G	Q	L	S	T	A	Q	K	Q	N	I	S	R	K	I	C	L	L	H	E	L	F	Q	P	V	H	P	V
Query Conservation																																		.
Alig confidence																																		.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	H	G	V	I	V	V	Y	D	V	T	S	A	E	S	F	V	N	V	K	R	W	L	H	E	I	N	Q	N	C	D	D	V	C	R	I	L	V	G	N	K	N	D	D	P	E	R	K	V	V	E	T	E	D	A	Y	K	F	A	G	Q	M	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	Q	L
Template Known Secondary structure		T		S								T	T																				T	T	S									T	T		G	G	G			S													.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.														.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	A	V	S	V	R	L	Q	W	G	L	K	V	M	A	E	R	M	I	K	C	L	P	R	E	A	T	S	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	T	S	A	K	E	N	V	N	V	E	E	M	F	N	C	I	T	E	L	V	L	R	A	K	K	D	N	L
Template Known Secondary structure					B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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