Job Description P75678 Confidence 98.32% Date Thu Jan 5 12:12:57 GMT 2012 Rank 275 Aligned Residues 145 % Identity 15% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.							.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	S	F	Q	Q	S	L	A	D	L	P	Q	W	V	S	E	R	L	L	Q	Q	I	N	Q	L	T	N	Y	E	P	V	I	G	I	M	G	K	T	G	V	G	K	S	S	L	C	N	A	L	F	.	.	.	.	.	.	A	G	D	I	S	P	V	S	D	V	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	A	V	K	E	A	V	S	E	I	L	E	T	S	R	R	I	D	L	I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H
Template Known Secondary structure													T			S											T	S		S										T	T	S	S															T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.																		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	C	T	R	E	P	L	R	F	R	L	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	R	Y	I	T	L	M	D	L	P	G	V	G	E	S	G	A	R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P	R	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	T	V
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																	.	.
Template Conservation																																																															.																	.	.
Template Sequence		A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	.	K	P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	.	.
Template Known Secondary structure					T	T							S	T	T																		T		S								S	S			S	S	S														.			S								T	T		T	T	T	.	.
Template Predicted Secondary structure																																																															.																	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	H	F	Y	H	Q	V	I	G	E	V	Y	R	H	K	V	L	F	V	I	S	Q	S	D
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	L	.	.	T	K	L	D
Template Known Secondary structure													S								.	.		S	G	G
Template Predicted Secondary structure																					.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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