Return to main results Retrieve Phyre Job Id

Job DescriptionP75678
Confidence98.87%DateThu Jan 5 12:12:57 GMT 2012
Rank251Aligned Residues151
% Identity19%Templatec3cpjB_
PDB info PDB header:protein transportChain: B: PDB Molecule:gtp-binding protein ypt31/ypt8; PDBTitle: crystal structure of ypt31 in complex with yeast rab-gdi
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  PVIGIMGKTGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDTEYAALYREQLPRLD
Query Conservation 
 


 
    








 
     
     

              
 
 
 

                      
Alig confidence 
























.......
































.....









Template Conservation   





   






 
     
.......                                 .....          
Template Sequence  FKIVLIGDSGVGKSNLLSRFTKNEF. . . . . . . NMGVEFATRTLEIEGKRIKAQIWDTAGQERYRA. . . . . ITSAYYRGAV
Template Known Secondary structure  S
TTSS


.......



STT

TTTTTTT
.....

GGGTTT

Template Predicted Secondary structure 









.......
















.....









Template SS confidence 















































































   14.....20.........30........ .40.........50.........60.........70. ........80.
 
   117..120.........130.........140.........150.........160.........170.........180.........190......
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  LVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEPTSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVS
Query Conservation   
  


                         
 
 

 
                                       
Alig confidence 





















.


































.............








Template Conservation        
               .         
    
 
               
  .............      
 
Template Sequence  GALIVYDSKSSSYENCNHWLSE. LRENADVAVGLIGNKSDLAHLRAVPTEESKTFAQE. . . . . . . . . . . . . NQLLFTETS
Template Known Secondary structure 


.




GGGGGG

S
.............TT


Template Predicted Secondary structure 





.



















.............



Template SS confidence 















































































   88.90.........100......... 110.........120.........130.........140.... .....150...
 
   197..200.........210....
Predicted Secondary structure 






Query SS confidence 

















Query Sequence  VRLQWGLKVMAERMIKCL
Query Conservation 
     
  
   
   
Alig confidence 



.












Template Conservation 

  . 
 
 
  
   
Template Sequence  ALSE. NVDKAFEELINTI
Template Known Secondary structure 



.
Template Predicted Secondary structure 



.
Template SS confidence 

















   157..160 .........170...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions