Job Description P75678 Confidence 96.93% Date Thu Jan 5 12:12:57 GMT 2012 Rank 393 Aligned Residues 125 % Identity 12% Template c2yc2D_ PDB info PDB header:transport protein Chain: D: PDB Molecule:small rab-related gtpase; PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas Resolution 2.59 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		V	S	D	V	A	A	C	T	R	E	P	L	R	F	R	L	Q	V	G	D	.	.	.	.	R	Y	I	T	L	M	D	L	P	G	V	G	E	S	G	A	R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P	R	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	T	V	D	E	H	F	Y	H	Q	V
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.
Template Sequence		I	T	A	T	L	R	C	K	V	A	V	V	V	A	P	V	T	I	P	D	T	T	V	S	V	E	L	F	L	L	D	T	A	G	S	.	.	.	.	.	.	.	D	L	Y	K	E	Q	I	S	Q	Y	W	N	G	V	Y	Y	A	I	L	V	F	D	V	S	S	M	E	S	F	E	S	C	K	A	W	F	E	L
Template Known Secondary structure			S																	T	T	S	S										T	T	T	T	.	.	.	.	.	.	.								S	T	T													T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.								.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure								.	.	.	.	.																																																								.	.
Query SS confidence								.	.	.	.	.																																																								.	.
Query Sequence		I	G	E	V	Y	R	.	.	.	.	.	H	K	V	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	G	Q	L	S	T	A	Q	K	Q	N	I	S	R	K	I	C	L	L	H	E	L	F	Q	P	V	H	P	V	C	A	V	S	V	R	L	Q	.	.	W	G	L	K	V	M	A	E	R	M	I	K
Query Conservation								.	.	.	.	.																																																								.	.
Alig confidence								.	.	.	.	.												.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.													.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence		L	K	S	A	R	P	D	R	E	R	P	L	R	A	V	L	V	A	N	K	T	Q	.	.	.	.	.	.	.	.	.	.	V	R	L	D	M	A	Q	D	W	A	T	T	N	.	.	.	.	.	.	.	.	.	T	L	D	F	F	D	V	S	A	A	D	A	P	F	L	S	I	A	T	T	F	Y	R	N	Y	E
Template Known Secondary structure							S		T	T	S													.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.											140	.	.	.	.	.	.	.	.	.	150	.	.										.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		213	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		192	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions