Job Description P75678 Confidence 98.82% Date Thu Jan 5 12:12:57 GMT 2012 Rank 253 Aligned Residues 157 % Identity 13% Template c2il1A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:rab12; PDBTitle: crystal structure of a predicted human gtpase in complex with gdp Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	E	P	V	I	G	I	M	G	K	T	G	V	G	K	S	S	L	C	N	A	L	F	A	G	D	I	S	P	V	S	D	V	A	A	C	T	R	E	P	L	R	F	R	L	Q	V	G	D	R	Y	I	T	L	M	D	L	P	G	V	G	E	S	G	A	R	D	T	E	Y	A	A	L	Y	R	E	Q	L	P
Query Conservation
Alig confidence																														.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		D	F	K	L	Q	V	I	I	I	G	S	R	G	V	G	K	T	S	L	M	E	R	F	T	D	S	T	V	.	.	.	.	.	.	.	G	V	D	F	K	I	K	T	V	E	L	R	G	K	K	I	R	L	Q	I	W	D	T	A	G	Q	.	.	.	.	.	E	R	F	N	S	I	T	S	A	Y	Y	R	S	A
Template Known Secondary structure		S										S	T	T	S	S													T	.	.	.	.	.	.	.	T											T	T													S	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	D	L	V	L	W	L	I	K	A	D	D	R	A	L	T	V	D	E	H	F	Y	H	Q	V	I	G	E	V	Y	R	H	K	V	L	F	V	I	S	Q	S	D	K	A	E	P	T	S	G	G	G	Q	L	S	T	A	Q	K	Q	N	I	S	R	K	I	C	L	L	H	E	L	F	Q	P	V	H	P	V	C
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	I	I	L	V	Y	D	I	T	K	K	E	T	F	D	D	L	P	K	W	M	K	M	I	D	K	Y	A	S	E	D	A	E	L	L	L	V	G	N	K	L	D	C	E	T	D	R	E	.	.	.	.	.	.	.	.	.	.	.	.	I	T	R	Q	Q	G	E	K	F	A	Q	Q	I	T	G	M	R	F	C
Template Known Secondary structure		S								T	T							T												S		T	T										G	G	G	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	S											T	S	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260													.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	V	R	L	Q	W	G	L	K	V	M	A	E	R	M	I	K	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	S	A	K	D	N	F	N	V	D	E	I	F	L	K	L	V	D	D	I
Template Known Secondary structure				B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions