|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | |
|
. | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . |
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | S | V | A | N | L | V | D | M | R | D | V | S | F | T | R | . |
. |
G | N | R | C | I | F | D | N | I | S | L | T | V | P | R | G | K | I | T | A | I | M | G | P | S | G | I | G | K | T | T | L | L | R | L | I | G | G | Q | I | A | P | D | H | G | E | I | L | F | D | G | E | N | I | P | A | M | S | R | S | R | L |
Query Conservation |   |
  |   |   |   |   |   |
|   |
|   |
|
|   |   |   |   | . | . |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|   |
|   |   |
|
|   |   |   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
E | R | V | N | G | E | V | D | V | K | D | V | T | F | T | Y | Q | G | K | E | K | P | A | L | S | H | V | S | F | S | I | P | Q | G | K | T | V | A | L | V | G | R | S | G | S | G | K | S | T | I | A | N | L | F | T | R | F | Y | D | V | D | S | G | S | I | C | L | D | G | H | D | V | R | D | Y | K | L | T | N | L |
Template Known Secondary structure |   |
|
|
|
| S | S |
| S | S |  |  |  |  |  |
|
|  |  | T | T |  |  |
|
|
|
|  |  |  |  |
|
| T | T |
|
|
|
|
|
|
| S |
| S | S |  |  |  |  |  |  |  |  | T | S | S | S | S |
|
| S | S | S |
|  |  |
|
|
|
|
|
|
|
| S | S | T | T | S |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
336 | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | T | V | R | K | R | M | S | M | L | F | Q | S | G | A | L | F | T | D | M | N | V | F | D | N | V | A | Y | P | L | R | E | H | T | Q | L | P | A | P | L | L | H | S | T | V | M | M | K | L | E | A | V | . |
. |
. |
. |
. |
G | L | R | G | A | A | K | L | M | P | S | E | L | S | G | G | M | A | R | R | A | A | L |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|
|   |
|
Alig confidence |   |
. | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . |   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |   | . |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|
|   |
|
Template Sequence |   |
. |
. |
. |
R | R | H | F | A | L | V | S | Q | N | V | H | L | F | N | D | . |
T | I | A | N | N | I | A | Y | A | A | E | G | E | Y | T | R | E | Q | I | E | Q | A | A | R | Q | A | H | A | M | E | F | I | E | N | M | P | Q | G | L | D | T | V | I | G | E | N | G | T | S | L | S | G | G | Q | R | Q | R | V | A | I |
Template Known Secondary structure |   |
. | . | . |
|
| B |
|
|
|  |  |  | S |
|
|
|
| S | S | . |
|  |  |  |  |  |  |  |  |  |  | T | T | T | S | S |
|
|
|
|  |  |  |  |  |  |  |  | G | G | G | G | G | G | S | S |
|  |  |  |  |  |  |  |  |  |
| S | S |
|
| T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . |  |  |  |
|  |  |  |  |
|
|
|
|
|
|  |  | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
416 | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | |
. | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . |
  |
  |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | A | I | A | L | E | P | D | L | I | M | F | D | E | P | F | V | G | Q | D | P | I | T | M | G | V | L | V | K | L | I | S | E | L | N | S | A | L | G | V | T | C | V | V | V | S | H | D | V | P | E | V | L | S | I | A | D | H | A | W | I | L | A | D | K | K | I | V | A | H | G | S | A | Q | A |
Query Conservation |   |
|   |
|
|   |   |   |
|   |
|
|
|
|
|
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|
|   |
|
|
|   |   |   |   |
|   |   |   |   |
|
|
|   |
|
|   |   |
|   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   | . |   |   |   |
|   |
|   |   |
|   |   |
|   |
|
|   |   |
|   |   |   |
|
Template Sequence |   |
A | R | A | L | L | R | D | A | P | V | L | I | L | D | E | A | T | S | A | L | D | T | E | S | E | R | A | I | Q | A | A | L | D | E | L | . |
. |
Q | K | N | K | T | V | L | V | I | A | H | R | L | S | T | I | . |
E | Q | A | D | E | I | L | V | V | D | E | G | E | I | I | E | R | G | R | H | A | D |
Template Known Secondary structure |   |
 |  |  | T | T | B |
| S |
| S |
|
|  |  |  |
|
| S |
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  | . | . |
| S | S |
|
|
|
|
|
| S |
|
|
| G | G | G | . | G |
|
|
|
| S | S |  |  |  |  |
| S | S | S |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  | . |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
492 | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | |
|
. | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | |
. | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . |
  |