Job Description P75713 Confidence 99.72% Date Thu Jan 5 12:13:23 GMT 2012 Rank 25 Aligned Residues 197 % Identity 14% Template c1fxzC_ PDB info PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer Resolution 2.80 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.										.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.
Query Sequence		A	S	F	V	D	Y	L	V	T	L	H	Q	N	G	G	N	Q	Q	G	F	G	G	E	G	I	E	T	F	L	Y	V	I	S	G	N	I	T	A	K	A	.	.	.	.	.	.	.	.	.	E	G	K	T	F	A	L	S	E	G	G	Y	L	Y	C	P	P	G	S	L	M	T	F	V	N	A	Q	A	E	D	S
Query Conservation																																										.	.	.	.	.	.	.	.	.
Alig confidence																.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		A	G	V	A	L	S	R	C	T	L	N	R	N	A	.	.	L	R	R	P	S	Y	T	N	G	P	Q	E	I	Y	I	Q	Q	G	K	G	I	F	G	M	I	Y	P	G	C	P	S	T	R	H	Q	K	I	Y	N	F	R	E	G	D	L	I	A	V	P	T	G	V	A	W	W	M	Y	N	N	E	D	T	P	V
Template Known Secondary structure			T										T	T		.	.								S	S																		S	S														T	T							T	T									S	S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																							.	.	.	.	.	150	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	F	L	Y	K	R	R	Y	V	P	V	E	G	Y	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	V	S	G	N	A	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	V	S	I	I	D	T	N	S	L	E	N	Q	L	D	Q	M	P	R	R	F	Y	L	A	G	N	Q	E	Q	E	F	L	K	Y	Q	Q	G	G	S	I	L	S	G	F	T	L	E	F	L	E	H	A	F	S	V	D	K	Q	I	A	K	N	L	Q	G	E	K	G	A	I	V	T	V	K	G	G	L	S	V
Template Known Secondary structure									T	T	S	T	T			S		S	S						S	S	S	S				T	T									S	S	T	T	S										T										S					S					S	S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
																	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	R	I	H	Y	E	G	M	D	D	V	I	L	L	D	F	L	P	K	E	L	G	F	.	.	.	.	D	M	N	M	H	I	L	S	F	A	P	G	A	S	H	G	Y	I	E	T	H	V	Q	E	H	G	A	Y	I	L	S	G	Q	G	V	Y	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		I	K	P	I	C	T	M	R	L	R	H	N	I	G	Q	T	S	S	P	D	I	Y	N	P	Q	A	G	S	V	T	T	A	T	S	L	D	F	P	A	L	S	W	L	R	L	S	A	E	F	G	S	L	R	K	N	A	M	F	V	P	H	Y	N	L	N	A	N	S	I	I	Y	A	L	N	G	R	A	L	I	Q
Template Known Secondary structure							S								S	S		S			S				T	T	T								T	T	T		T	T					T										T	T									S	S										S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		215					.	.	.	.	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.						.	.
Query SS confidence			.	.	.	.						.	.
Query Sequence		L	.	.	.	.	D	N	N	W	I	.	.	P	V	K	K	G	D	Y	I	F	M	G	A	Y	S	L	Q	A	G	Y	G	V	G	R	G	E	A	F	S	Y	I	Y	S	K	D	C	N	R
Query Conservation			.	.	.	.						.	.
Alig confidence			.	.	.	.						.	.																	.						.
Template Conservation																														.						.
Template Sequence		V	V	N	C	N	G	E	R	V	F	D	G	E	L	Q	E	G	R	V	L	I	V	P	Q	N	F	V	V	.	A	A	R	S	Q	.	S	D	N	F	E	Y	V	S	F	K	T	N	D	T
Template Known Secondary structure					T	T	S										T	T							S	S				.						.	S	S									S	S	S	S
Template Predicted Secondary structure																														.						.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions