Job Description P33232 Confidence 99.97% Date Thu Jan 5 11:51:32 GMT 2012 Rank 44 Aligned Residues 301 % Identity 14% Template c2vdcF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		43	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		S	E	V	A	L	R	Q	.	R	I	L	K	N	M	S	D	L	S	L	E	T	T	L	F	N	E	K	L	S	M	P	V	A	L	A	P	V	G	L	C	G	M	Y	A	R	R	G	E	V	Q	A	A	K	A	A	D	A	H	G	I	P	F	T	L	S	T	V	S	V	C	P	I	E	E	V	A	P	A	I	K
Query Conservation									.
Alig confidence									.											.				.	.	.	.																		.																												.	.	.	.	.	.	.	.	.
Template Conservation																				.				.	.	.	.																		.																												.	.	.	.	.	.	.	.	.
Template Sequence		D	L	L	E	L	R	S	T	K	A	P	V	P	V	D	E	V	E	.	S	I	T	.	.	.	.	A	I	R	K	R	F	I	T	P	G	M	S	M	G	A	L	S	.	P	E	A	H	G	T	L	N	V	A	M	N	R	I	G	A	K	S	D	S	G	E	G	G	E	D	P	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	B					S	S					G	G	G	S		.				.	.	.	.				T	T								B	T	T	B		.														T	T							S	S				G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.				.	.	.	.																		.																												.	.	.	.	.	.	.	.	.
Template SS confidence
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.		.	.	.					.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.		.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	M	W	F	Q	L	Y	V	L	R	D	R	G	F	M	R	N	A	L	E	R	A	K	A	A	G	C	S	T	L	V	F	T	V	D	M	P	T	P	G	A	R	Y	R	D	A	H	S	G	M	S	G	P	N	A	A	M	R	R	Y	L	Q	A	V	T	H	P	Q	W	A	W	D	V	G	L	N	G	R	P
Query Conservation
Alig confidence		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		.	.	.	.	A	R	F	R	P	D	K	N	G	D	N	W	N	S	A	I	K	Q	V	A	S	G	R	F	.	.	.	.	.	.	.	.	.	.	.	.	G	V	T	A	E	Y	L	N	Q	C	R	E	L	E	I	K	V	A	Q	G	A	K	P	G	E	G	.	.	.	.	.	.	G	Q	L	P	G	F	K	V
Template Known Secondary structure		.	.	.	.	G	G	G	S			T	T	S						S						S	S		T	.	.	.	.	.	.	.	.	.	.	.	.	T							T	S		S									T	T		T	T	T		.	.	.	.	.	.					G	G	G
Template Predicted Secondary structure		.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
						892	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.													.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.							.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																															.						.	.	.
Query SS confidence																																															.						.	.	.
Query Sequence		H	D	L	G	N	I	S	A	Y	L	G	K	P	T	G	L	E	D	Y	I	G	W	L	G	N	N	F	D	P	S	I	S	W	K	D	L	E	W	I	R	D	F	W	D	G	.	P	M	V	I	K	.	.	.	G	I	L	D	P	E	D	A	R	D	A	V	R	F	G	A	D	G	I	V	V	S	N	H	G	G
Query Conservation																																															.						.	.	.
Alig confidence																																		.													.						.	.	.
Template Conservation																																		.
Template Sequence		T	E	M	I	A	R	L	R	H	S	T	P	G	V	M	L	I	S	P	P	P	H	H	D	I	Y	S	I	E	D	L	A	.	Q	L	I	Y	D	L	K	Q	I	N	P	D	A	K	V	T	V	K	L	V	S	R	S	G	I	G	T	I	A	A	G	V	A	K	A	N	A	D	I	I	L	I	S	G	N	S	G
Template Known Secondary structure										T			T	T							S	S		T	T		S	S						.											T	T											T	T											T	T		S							T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.		.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.
		278	.	280	.	.									.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.																.	.	.	.	.																																										.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.																.	.	.	.	.																																										.	.	.	.	.	.
Query Sequence		R	Q	L	D	G	.	.	.	.	.	.	.	.	V	L	S	S	A	R	A	L	P	A	I	A	D	A	V	.	.	.	.	.	K	G	D	I	A	I	L	A	D	S	G	I	R	N	G	L	D	V	V	R	M	I	A	L	G	A	D	T	V	L	L	G	R	A	F	L	Y	A	L	A	T	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.																.	.	.	.	.																																										.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	G	A	S	P	Q	T	S	I	K	F	A	G	L	P	W	E	M	G	L	S	E	V	H	Q	V	L	T	L	N	R	L	R	H	R	V	R	L	R	T	D	G	G	L	K	T	G	R	D	I	V	I	A	A	M	L	G	A	E	E	F	G	I	G	T	A	S	L	I	A	M	G	C	I	M	V	R	Q	C
Template Known Secondary structure				S	S									S																		T	T		T	T	T	S						S	S			S										T	T		S												T	T							G
Template Predicted Secondary structure
Template SS confidence
		1029	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.
																							339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	Q	A	G	V	A	N	L	L	N	L	I	E	K	E	M	K	V	A	M	T	L	T	G	A	K	S	I	S	E	I	.	T	Q	D	S	L	V	Q	G	L	G	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		H	S	N	T	C	P	V	G	V	C	V	Q	D	D	K	L	R	Q	K	F	V	G	T	P	E	K	V	V	N	L	F	T	F	L	A	E	E	V	R	E	I	L	A	G	L	G	F	R	S	L	N	E	V	I	G	R	T	D	L	L	H	Q	V	S	R
Template Known Secondary structure		G	G	T			T	T	S	S	S								T	T																											T		S	S	S	G	G	G	T	T		G	G	G			B
Template Predicted Secondary structure
Template SS confidence
		1109	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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