Job Description P33232 Confidence 99.96% Date Thu Jan 5 11:51:32 GMT 2012 Rank 45 Aligned Residues 310 % Identity 16% Template c1lm1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		43	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.
Predicted Secondary structure									.																																																														.	.	.	.	.
Query SS confidence									.																																																														.	.	.	.	.
Query Sequence		S	E	V	A	L	R	Q	.	R	I	L	K	N	M	S	D	L	S	L	E	T	T	L	F	N	E	K	L	S	M	P	V	A	L	A	P	V	G	L	C	G	M	Y	A	R	R	G	E	V	Q	A	A	K	A	A	D	A	H	G	I	P	F	T	L	S	T	V	S	V	.	.	.	.	.	C	P	I	E	E	V
Query Conservation									.																																																														.	.	.	.	.
Alig confidence									.											.				.	.	.	.																		.																										.	.	.	.	.
Template Conservation																				.				.	.	.	.																		.
Template Sequence		D	L	L	D	F	N	A	D	Q	P	A	I	S	L	E	E	V	E	.	S	V	E	.	.	.	.	S	I	V	K	R	F	C	T	G	G	M	S	L	G	A	L	S	.	R	E	A	H	E	T	L	A	I	A	M	N	R	L	G	A	K	S	N	S	G	E	G	G	E	D	V	V	R	Y	L	T	L	D	D	V
Template Known Secondary structure		G	G						S	S					T	T	T	S		.				.	.	.	.				T	T								T	T	T	S		.														T	T		B		B		T	T	S				G	G	G	G	S
Template Predicted Secondary structure																				.				.	.	.	.																		.
Template SS confidence
		844	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.		.	.	.					.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.		.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	I	K	R	P	M	W	F	Q	L	Y	V	L	R	D	R	G	F	M	R	N	A	L	E	R	A	K	A	A	G	C	S	T	L	V	F	T	V	D	M	P	T	P	G	A	R	Y	R	D	A	H	S	G	M	S	G	P	N	A	A	M	R	R	Y	L	Q	A	V	T	H	P	Q	W	A	W	D	V	G
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		D	S	E	G	N	S	P	T	L	P	H	L	H	G	L	Q	N	G	D	T	A	N	S	A	I	K	Q	I	A	S	G	R	F	.	.	.	.	.	.	.	.	.	.	.	.	G	V	T	P	E	Y	L	M	S	G	K	Q	L	E	I	K	M	A	Q	G	A	K	P	G	E	G	.	.	.	.	.	.	G	Q	L
Template Known Secondary structure			T	T	S			T	T	S	T	T			S			T	T						S						T	T		T	.	.	.	.	.	.	.	.	.	.	.	.	T								T		S									T	T		T	T	S		.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
		918	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950													.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.							.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																				.						.	.	.
Query SS confidence																																																				.						.	.	.
Query Sequence		L	N	G	R	P	H	D	L	G	N	I	S	A	Y	L	G	K	P	T	G	L	E	D	Y	I	G	W	L	G	N	N	F	D	P	S	I	S	W	K	D	L	E	W	I	R	D	F	W	D	G	.	P	M	V	I	K	.	.	.	G	I	L	D	P	E	D	A	R	D	A	V	R	F	G	A	D	G	I	V	V
Query Conservation																																																				.						.	.	.
Alig confidence																																							.													.						.	.	.
Template Conservation																																							.
Template Sequence		P	G	K	K	V	S	E	Y	I	A	M	L	R	R	S	K	P	G	V	T	L	I	S	P	P	P	H	H	D	I	Y	S	I	E	D	L	A	.	Q	L	I	Y	D	L	H	Q	I	N	P	E	A	Q	V	S	V	K	L	V	A	E	I	G	I	G	T	I	A	A	G	V	A	K	A	N	A	D	I	I	Q	I
Template Known Secondary structure			G	G	G										T	S		T	T							S	S		T	T		S	S						.											T	T	S										T	T											T	T		S
Template Predicted Secondary structure																																							.
Template SS confidence
		980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.		.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.									.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.																.	.	.	.	.																																										.
Query SS confidence												.	.	.	.	.	.	.	.																.	.	.	.	.																																										.
Query Sequence		S	N	H	G	G	R	Q	L	D	G	.	.	.	.	.	.	.	.	V	L	S	S	A	R	A	L	P	A	I	A	D	A	V	.	.	.	.	.	K	G	D	I	A	I	L	A	D	S	G	I	R	N	G	L	D	V	V	R	M	I	A	L	G	A	D	T	V	L	L	G	R	A	F	L	Y	A	L	A	T	.
Query Conservation												.	.	.	.	.	.	.	.																.	.	.	.	.																																										.
Alig confidence												.	.	.	.	.	.	.	.																.	.	.	.	.																																										.
Template Conservation
Template Sequence		S	G	H	D	G	G	T	G	A	S	P	L	S	S	I	K	H	A	G	S	P	W	E	L	G	V	T	E	V	H	R	V	L	M	E	N	Q	L	R	D	R	V	L	L	R	A	D	G	G	L	K	T	G	W	D	V	V	M	A	A	L	M	G	A	E	E	Y	G	F	G	S	I	A	M	I	A	E	G	C	I
Template Known Secondary structure				T	T				S	S									B																		T	T		G	G	G							S	S			S											T		S					S							T	T
Template Predicted Secondary structure
Template SS confidence
		1059	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.
																												339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	Q	A	G	V	A	N	L	L	N	L	I	E	K	E	M	K	V	A	M	T	L	T	G	A	K	S	I	S	E	I	.	T	Q	D	S	L	V	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation
Template Sequence		M	A	R	V	C	H	T	N	N	C	P	V	G	V	A	T	Q	Q	E	R	L	R	Q	R	F	K	G	V	P	G	Q	V	V	N	F	F	Y	F	I	A	E	E	V	R	S	L	L	A	H	L	G	Y	R	S	L	D	D	I	I	G	R	T	D	L	L	K
Template Known Secondary structure						G	G	G	T			T	T	S	S	S								T	T																											T		S		G	G	G	T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		1139	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions