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Job DescriptionP33232
Confidence98.97%DateThu Jan 5 11:51:32 GMT 2012
Rank83Aligned Residues215
% Identity14%Templatec1djnB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80...... ...90.........100.........110. ......
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Query Sequence  TLFNEKLSMPVALAPVGLCGMYAR. RGEVQAAKAADAHGIPFTLSTVSVC. . . . . . . . . . . . . . . . . . . . . . . . PIEEVA
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Template Sequence  QIGPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEV
Template Known Secondary structure  TTSSS




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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   118.120.........130.. .......140.........150.......
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Query Sequence  PAIKRPMWFQLYVLR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DRGFMRNALERAKAAGCSTLVFTVD. .
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Template Sequence  HKYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHS
Template Known Secondary structure  TT


GGGS

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   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   158.160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  . . . . . . . MPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDP
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Template Sequence  YLPLQFLNPYYNKRTDKY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGSLENRARFWL. . . . .
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   174.....180.........190. ........200...
 
   231........240... ......250. ....... .260.........270.........280......
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Query Sequence  SISWKDLEWIRDF. . WDGPMVIK. . . . . . . . . GILDPED. . . . ARDAVRFGADGIVVSNHGGRQLDGVLSS. . . . . . . . .
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Template Sequence  . . . . ETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHT
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   204.....210.........220.........230.........240.........250.........260.........270.........
 
   287..290.........300.........310.........320.. .......330...
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Query Sequence  ARALPAIADAVKGDIAILADSGIRNGLDVVRMIALG. ADTVLLGRAFL
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Template Sequence  IPWVKLVKQVS. . KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSI
Template Known Secondary structure  TT
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   280.........290 .........300.........310.........320.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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