|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
70 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
| . | . | . | . | . | . | . |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
Query Sequence |   |
M | Y | Q | P | D | F | P | P | V | P | F | R | S | G | L | Y | P | V | V | D | S | V | Q | W | I | E | R | L | L | D | A | G | V | R | T | L | Q | L | R | I | K | D | R | R | D | . |
E | E | V | E | A | D | V | V | A | A | I | A | L | G | R | R | Y | N | A | R | L | F | I | N | . |
. |
. |
. |
. |
. |
. |
D | Y | W |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|
|
|
|   |
|   |   |   |   | . |   |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|
|   | . | . | . | . | . | . | . |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |
|
|
|   |
|   |
|   | . |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |
|
Template Sequence |   |
F | S | K | S | D | I | I | V | S | P | S | I | L | S | A | N | F | . |
S | K | L | G | E | Q | V | K | A | I | E | Q | A | G | C | D | W | I | H | V | D | V | M | D | G | R | F | V | P | N | I | T | I | G | P | L | V | V | D | S | L | R | P | I | T | D | L | P | L | D | V | H | L | M | I | V | E | P | D | Q | R | V |
Template Known Secondary structure |   |
S |
| T | T | S |
|  |  |  |  | B | G | G | G | S |
| G | . | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |  | B | S | S | S | S | S |
| B |
|
|
|  |  |  |  |  |  |  | G | G | G |
|
| S |
|  |  |  |  |  |  | S | S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | |
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |
|
|  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | L | A | I | K | H | Q | A | Y | G | V | H | L | G | Q | E | D | L | Q | A | T | D | L | N | A | I | R | . |
. |
. |
. |
. |
. |
A | A | G | L | R | L | G | V | S | T | H | D | D | M | E | I | D | V | A | L | A | A | R | P | S | Y | I | A | L | G | H | V | F | P | T | Q | T | K | Q | M | P | S | A | P | Q | G | L |
Query Conservation |   |
  |   |
|   |   |   |   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |
|
|
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|
|   |   |   |
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   | . |   |   |   |
Template Sequence |   |
P | D | F | I | K | A | G | A | D | I | V | S | V | H | C | E | Q | S | S | T | I | H | L | H | R | T | I | N | Q | I | K | S | L | G | A | K | A | G | V | V | L | N | P | G | T | P | L | T | A | I | E | Y | V | L | D | A | V | D | L | V | L | I | M | S | V | N | P | G | F | G | G | Q | S | F | I | E | . |
S | Q | V |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| S |  |  |  |  |  |
| S | T | T | T |
| S |
|  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |
| T | T |
|
| G | G | G | G | T | T | T | T | T | T |
| S |  |  |  |  |  | S | S |
| T | T |
| S | S |
|
|
|
| T | . | T |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | |
. | . | . |
  |
  |   |
147 | . | . | 150 | . | . | . | . | . | . | . | |
|
|
|
. | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | Q | L | A | R | H | V | E | R | L | A | . |
. |
. |
. |
D | Y | P | T | V | A | I | G | G | I | S | L | A | R | A | P | A | V | I | A | T | G | V | G | S | I | A | V | V | S | A | I | T | Q | A | A | D | W | R | L | A | T | A | Q | L | L | E | I | A |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   | . | . | . | . |   |   |
|
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|   |   |   |
|
|   |
|
|
|
|   |
|
|
|   |   |
|   |
|
|   |   |   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |   |   |   |   |
|
|   |   |   |
Template Sequence |   |
K | K | I | S | D | L | R | K | I | C | A | E | R | G | L | N | P | W | I | E | V | D | G | G | V | G | P | K | N | A | Y | K | V | I | E | A | G | A | N | A | L | V | A | G | S | A | V | F | G | A | P | D | Y | A | E | A | I | K | G | I | K | T | S | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  | S | S |
|
| T | T | T |  |  |  |  |  |  |  | T |
|
|  |  |  |  | S |  |  |  |  | T | S | S |
|  |  |  |  |  |  |  |  |  | T |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . |
  |