Job Description P30137 Confidence 99.46% Date Thu Jan 5 11:45:54 GMT 2012 Rank 44 Aligned Residues 190 % Identity 16% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	D	F	P	P	V	P	F	R	S	G	L	Y	P	V	V	D	S	V	Q	W	I	E	R	L	L	D	A	G	V	R	T	L	Q	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	D	R	R	D	E	E	V	E	A	D	V	V	A	A	I	A	L	G	R	R
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																																														.	.
Template Sequence		Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C	F	E	L	I	A	Q	I	R	A	.	.	R	N
Template Known Secondary structure		T	B									T	T	S	S															T	T		S	S										T	T																T	T																.	.
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.
		62	.	.	.	.	.	.													.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																													.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																													.
Query Sequence		Y	N	A	R	L	F	I	.	.	.	.	.	.	.	.	.	.	.	.	N	D	Y	W	R	L	A	I	K	H	Q	A	Y	G	V	H	L	G	.	.	.	.	Q	E	D	L	Q	A	T	D	L	N	A	I	R	A	A	G	L	R	L	G	V	S	T	H	D	D	M	E	.	I	D	V	A	L	A	A	R	P	S
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																													.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																													.
Template Conservation
Template Sequence		P	E	T	P	I	G	L	L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	A	D	V	P	T	N	E	S	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F	I	A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L	G	K	G
Template Known Secondary structure		T	T	S													T	T													T							T	T	S		G	G	G											T	T									T	T			S												S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.
Predicted Secondary structure																																													.																									.	.	.	.	.
Query SS confidence																																													.																									.	.	.	.	.
Query Sequence		Y	I	A	L	G	H	V	F	P	T	Q	T	K	Q	M	P	S	A	P	Q	G	L	E	Q	L	A	R	H	V	E	R	L	A	D	Y	P	T	V	A	I	G	G	I	.	S	L	A	R	A	P	A	V	I	A	T	G	V	G	S	I	A	V	V	S	A	I	T	Q	.	.	.	.	.	A	A	D	W	R	L	A
Query Conservation																																													.																									.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																												.																									.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	L	S	R	A	P	V	H	A	L	L	E	R	L	Q	Q	F	D	A	P	P	A	L	L	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.																T	T								S	S			S										T	T		S					S	S									T	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.													.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		199	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Q	L	L	E	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	E	L	A	N	F	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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