Job Description P30137 Confidence 95.86% Date Thu Jan 5 11:45:54 GMT 2012 Rank 210 Aligned Residues 163 % Identity 15% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		M	Y	Q	P	D	F	P	P	V	P	F	R	S	G	L	Y	P	V	V	D	S	V	Q	W	I	E	R	L	L	D	A	G	V	R	T	L	Q	L	R	I	K	D	R	R	D	E	E	V	E	A	D	V	V	A	A	I	A	L	G	R	R	Y	N	A	R	L	F	I	N	D	Y	W	R	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																						.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Sequence		L	P	F	S	N	Q	S	I	I	P	A	A	H	N	Q	.	.	.	.	.	.	.	K	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	T	H	V	.	.	.	.	.	.	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	D	L	V	N	G	L	K	N	D	D
Template Known Secondary structure			S		T	T								S	S	S	.	.	.	.	.	.	.							T	T	S	S								S			T	.	.	.	.	.	.	T	T											T	T							G	G	G			T				S
Template Predicted Secondary structure																	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
							74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																	.	.	.	.
Query SS confidence		.	.	.	.	.																																																	.	.	.	.
Query Sequence		.	.	.	.	.	L	A	I	K	H	Q	A	Y	G	V	H	L	G	Q	E	D	L	Q	A	T	D	L	N	A	I	R	A	A	G	L	R	L	G	V	S	T	H	D	D	M	E	I	D	V	A	L	A	A	.	.	.	.	R	P	S	Y	I	A	L	G	H	V	F	P	T	Q	T	K	Q	M	P	S	A	P	Q
Query Conservation		.	.	.	.	.																																																	.	.	.	.
Alig confidence		.	.	.	.	.																.	.																																.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	I	D	F	L	C	T	E	I	C	P	D	G	I	I	S	T	R	G	.	.	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	.	.	.	.	.	.	.	.	.	.	.	.	L	P	G	I
Template Known Secondary structure										T	T			S					S			.	.									T	T											S																	S					.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																						.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.													.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.
Predicted Secondary structure																							.																								.
Query SS confidence																							.																								.
Query Sequence		G	L	E	Q	L	A	R	H	V	E	R	L	A	D	Y	P	T	V	A	I	G	.	G	I	S	L	A	R	A	P	A	V	I	A	T	G	V	G	S	I	A	V	V	S	A	.	I	T	Q
Query Conservation																							.																								.
Alig confidence														.									.																								.
Template Conservation														.
Template Sequence		I	P	E	Q	V	Q	K	M	T	Q	K	L	.	H	I	P	V	I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T	T	S	N	K	H	L	W	E
Template Known Secondary structure														.								S	S			S									T	T	T									G	G	G	G	T
Template Predicted Secondary structure														.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions