Job Description P30137 Confidence 83.13% Date Thu Jan 5 11:45:54 GMT 2012 Rank 320 Aligned Residues 171 % Identity 13% Template c1pklB_ PDB info PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase Resolution 2.35 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.																														.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	S	V	Q	W	I	E	R	L	L	D	A	G	V	R	T	L	Q	L	R	I	K	D	R	R	D	E	E	V	E	A	D	V	V	A	A	I	A	L	G	R	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	R	L	F	I	N
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	S	V	E	A	L	K	G	L	I	Q	S	G	M	S	V	A	R	M	N	F	S	H	G	S	H	E	Y	H	Q	T	T	I	N	N	V	R	Q	A	A	A	E	L	G	V	N	I	A	I	A	L	D	T	K	G	P	E	I	R	T	G	Q	F	V	G	G	D	A	V	M	E	R	G	A	T	C	Y	V	T
Template Known Secondary structure		T		S											T								T	T	S	S																				T																B			B	T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Y	W	R	L	A	I	K	H	Q	A	Y	G	V	H	L	G	Q	E	D	L	Q	A	T	D	L	N	A	I	R	A	A	G	L	R	L	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		T	D	P	A	F	A	D	K	G	T	K	D	K	F	Y	I	.	.	.	.	.	D	Y	Q	N	L	S	K	V	V	R	P	G	N	Y	I	Y	I	D	D	G	I	L	I	L	Q	V	Q	S	H	E	D	E	Q	T	L	E	C	T	V	T	N	S	H	T	I	S	D	R	R	G	V	N	L	P	G	C	D	V	D
Template Known Secondary structure				G	G	G	S	S		B		S	S				B	.	.	.	.	.	S		T	T							T	T						T	T	T	T									S	S	S	S								S						S	S						T	T
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.						.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
						108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.	.	.	.																																																		.								.	.
Query SS confidence		.	.	.	.																																																		.								.	.
Query Sequence		.	.	.	.	S	T	H	D	D	M	E	I	D	V	A	L	A	A	R	P	S	Y	I	A	L	G	H	V	F	P	T	Q	T	K	Q	M	P	S	A	P	Q	G	L	E	Q	L	A	R	H	V	E	R	L	.	A	D	Y	P	T	V	A	.	.	I	G	G	I	S	L	A	R	A	P	A	V	I	A	T	G	V
Query Conservation		.	.	.	.																																																		.								.	.
Alig confidence		.	.	.	.																									.	.	.	.	.	.	.	.	.																	.								.	.																.
Template Conservation																														.	.	.	.	.	.	.	.	.																																										.
Template Sequence		L	P	A	V	S	A	K	D	R	V	D	L	Q	F	G	V	E	Q	G	V	D	M	I	F	A	S	F	I	.	.	.	.	.	.	.	.	.	R	S	A	E	Q	V	G	D	V	R	K	A	L	G	P	K	G	R	D	I	M	I	I	C	K	I	E	N	H	Q	G	V	Q	N	I	D	S	I	I	E	E	.	S
Template Known Secondary structure				S	S															T		S					T	T		.	.	.	.	.	.	.	.	.		S													G	G	G	T	T	S								S						T								.	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																																										.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.										.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	I	A	V	V	S	A	I	T	Q	A	A	D	W	R	L	A	T	A	Q	L	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	I	M	V	A	R	G	D	L	G	V	E	I	P	A	E	K	V	V	V	A	Q	K
Template Known Secondary structure		S													S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions