Job Description P30137 Confidence 98.69% Date Thu Jan 5 11:45:54 GMT 2012 Rank 90 Aligned Residues 180 % Identity 13% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.															.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Q	W	I	E	R	L	L	D	A	G	V	R	T	L	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	K	D	R	R	D	E	E	V	E	A	D	V	V	A	A	I	A	L	G	R	R	Y	N	A	R	L	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	H	R	S	V	K	A	E	G	G	W	A	A	L	N	T	E	Y	C	S	I	N	P	E	S	D	D	T	H	R	L	S	A	R	I	W	D	E	G	D	V	R	N	L	K	A	M	T	D	E	V	H	K	Y	G	A	L	A	G	V	E	L	W	Y	G	G	A	H	A	P	N	M	E	S	R	A	T	P	R
Template Known Secondary structure											T	T		S									S	S	T	T	S			T	T	S						S	S																	T	T											G	G	G	S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
																																69	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	Y	W	R	L	A	I	K	H	Q	A	Y	G	V	.	.	H	L	G	Q	E	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	P	S	Q	Y	A	S	E	F	E	T	L	S	Y	C	K	E	M	D	L	S	D	I	A	Q	V	Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F
Template Known Secondary structure			S	S			B		S	S	S	T	T		B																										T	T		S								T	T									T	T	T					S	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
					91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.													.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query SS confidence		.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query Sequence		.	.	.	Q	A	T	D	L	N	A	I	R	A	A	G	L	R	L	G	.	.	V	S	T	H	D	.	.	.	.	.	.	.	.	.	.	.	.	D	M	E	I	D	V	A	L	A	A	R	P	S	Y	I	A	L	G	H	V	.	.	.	.	.	F	P	T	Q	T	K	Q	M	P	S	A	P	Q	G	L	E	Q
Query Conservation		.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Alig confidence		.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation
Template Sequence		W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P
Template Known Secondary structure														T	T	T	S											S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																					.													.
Query SS confidence																					.													.
Query Sequence		L	A	R	H	V	E	R	L	A	D	Y	P	T	V	A	I	G	G	I	.	S	L	A	R	A	P	A	V	I	A	T	G	.	V	G	S	I	A	V	V	S	A	I	T	Q	A	A	D	W	R	L	A	T	A	Q
Query Conservation																					.													.
Alig confidence																					.													.
Template Conservation
Template Sequence		W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C	A	R	P	S	I	A	D	P	F	L	P	Q	K	V	E	Q
Template Known Secondary structure								T	T		S	S						S														T	T	S		S	B				S							T	T							T
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions