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Job DescriptionP28631
Confidence99.97%DateThu Jan 5 11:45:02 GMT 2012
Rank6Aligned Residues281
% Identity14%Templatec3u5zM_
PDB info PDB header:dna binding protein/dnaChain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK
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Template Sequence  CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVR. . . . . . . . . . . . . . . . .
Template Known Secondary structure  S


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GGG

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   23......30.........40.........50.........60.........70.........80.....
 
   84.....90.........100.........110.........120.........130.. .......140.........150.........160..
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Query Sequence  GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTL. EEPPAETWFFLATREPERLLATLRSRCRLH
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Template Sequence  . . . . . . . . . . GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI
Template Known Secondary structure  ..........TS

TT


S


GGGTTTTS
GGGS
S
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   86...90.........100.........110.........120.........130.........140.........150.....
 
   163......170.........180. ........190.........200.........210.........220.........
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Query Sequence  YLAPPPEQYAVTWLSREVT. . . . . . . . . . . . . MSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDW
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Template Sequence  TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKGVLDAGILSLVTNDRGAI
Template Known Secondary structure  TT


T
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ST
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T
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TTTT




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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   230.........240.........250.........260.........270.........280.........290.........300.........
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Query Sequence  YSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRE
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Template Sequence  DDVLESLKNKDVKQLRALAPKY. . . . . . . . . . . AADYSWFVGKLAEEIYSRVTPQSIIRMYEIVGENNQYHGI. . AANTE
Template Known Secondary structure  TT
S...........SSSS
TTT..
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   236...240.........250....... ..260.........270.........280.........290....... ..300..
 
   310.........320....
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Query Sequence  LLITDLLLRIEHYLQ
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Template Sequence  LHLAYLFIQLACEMQ
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   303......310.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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