Job Description P28631 Confidence 99.51% Date Thu Jan 5 11:45:02 GMT 2012 Rank 41 Aligned Residues 193 % Identity 9% Template c3te6A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:regulatory protein sir3; PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain Resolution 2.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	.
Query Conservation																																																																																	.
Alig confidence																				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	R	I	F	L	P	I	Y	D	S	L	X	S	S	Q	N	K	L	.	F	Y	I	T	N	A	D	D	S	T	K	F	Q	L	V	N	D	V	X	D	E	L	I	T	S	S	A	R	K	E	L	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	Y	I	H	I	D	A	L	E	L	X
Template Known Secondary structure														T	T					.								S																	T	T	T	T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																				.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.		.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.																	.	.	610	.	.	.	.	.	.	.	.	.
																		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	.	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	P	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																				.
Template Conservation																															.	.
Template Sequence		D	A	L	Y	E	K	I	W	F	A	I	S	K	E	N	G	D	I	S	L	E	A	L	N	F	Y	I	T	N	.	.	V	P	K	A	K	K	R	K	T	L	I	L	I	Q	N	P	E	N	L	L	S	E	K	I	L	Q	Y	F	E	K	W	I	S	S	K	N	S	K	L	S	I	I	C	V	G	G	H	N	V
Template Known Secondary structure													S																		.	.	S		G	G	G	S											S	S	S			T													S	S											S	S
Template Predicted Secondary structure																															.	.
Template SS confidence
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650			.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
		150					.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																																	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure			.	.	.	.										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	.	.	.	.	L	L	A	T	L	R	S	R	C	.	.	R	L	H	Y	L	A	P	P	P	E	Q	Y	A	V	T	W	L	S	R	E	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	Q	D	A	L	L	A	A	L
Query Conservation			.	.	.	.										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.										.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	R	E	Q	I	N	I	X	P	S	L	K	A	H	F	T	E	I	K	L	N	K	V	D	K	N	E	L	Q	Q	X	I	I	T	R	L	K	S	L	L	K	P	F	H	V	K	V	N	D	K	K	E	X	T	I	Y	N	N	I	P	D	N	V	I	V	I	N	H	K	I	N	N	K	I	T	Q	L	I	A
Template Known Secondary structure									T						T	T																																			T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
		192	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		R	L	S	.	.	.	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	E	T	L	C	Q	A
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		K	N	V	A	N	V	S	G	S	T	E	K	A	F	K	I	C	E	A	A	V	E	I	S	K	K	D	F	V	R	K
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions