Job Description P28631 Confidence 97.89% Date Thu Jan 5 11:45:02 GMT 2012 Rank 102 Aligned Residues 139 % Identity 18% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	E	F	L	K	K	C	M	Q	F	Y	Y	M	Q	K	T	Q	Q	A	L	I	L	V	G	K	A	G	C	G	K	T	A	T	W	K	T	V	I	D	A	M	A	I	F	D	G	H	A	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	V	I	D	T	K	V	L	T	K
Template Known Secondary structure																	S	S										T	T	S	S	T	T													T	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S		T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2042	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.																			.	.	.	.	.	.	.	2100	.	.	.
		87																	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Query Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	.	.	.	.	.	.	.	A	E	T	W	F	F	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.					.	.	.	.	.	.	.
Template Conservation																																																													.	.	.
Template Sequence		E	S	L	Y	G	S	M	L	K	A	T	L	E	W	R	D	G	L	F	T	S	I	L	R	R	V	N	D	D	I	T	G	T	F	K	N	S	R	I	W	V	V	F	D	S	D	L	D	P	E	Y	V	E	A	M	N	S	V	L	.	.	.	D	D	N	K	G	E	R	L	P	I	P	P	N	F	R	I	L	F
Template Known Secondary structure		S	S	S	S	S	S				S	S	T	T																S	S			S	S										S	S		S		S	T	T							T	T	.	.	.		B						B
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		2112	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170				.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	D	N	L	D	H	T	T	P	A	T	I	T	R	C	G	L	L	W	F	S	S
Template Known Secondary structure			S			S	T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		2195	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions