Job Description P28631 Confidence 96.26% Date Thu Jan 5 11:45:02 GMT 2012 Rank 203 Aligned Residues 118 % Identity 14% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	.
Query Conservation																																																																																	.
Alig confidence																	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	K	F	E	S	E	I	L	E	A	I	S	Q	N	.	.	.	.	.	.	.	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	N	D	R	A	A	E	C	N	I	V	V	T	Q	P	R
Template Known Secondary structure		G	G	G	G												.	.	.	.	.	.	.	S								T	T	S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		G	G	G								S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.								.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.																	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
																																			82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	.	.	L	L	T	D	A	A	A	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																	.	.
Template Conservation																																																						.	.
Template Sequence		R	I	S	A	V	S	V	A	E	R	V	A	F	E	R	G	E	E	P	G	K	S	C	G	Y	S	V	R	F	E	S	I	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	.	.	E	A	G	I	R	G	I	S	H	V	I	V	D	E	I	H	E	R	D	I	N	T	D	F	L	L
Template Known Secondary structure															T	T	T			T	T	S	S						T	T							S	S	S															.	.					T	T									T	T	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	L	R	D	V	V	Q	A	Y	P	E	V	R	I	V	L	X	S
Template Known Secondary structure												T	T	S
Template Predicted Secondary structure
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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