Job Description P28631 Confidence 96.38% Date Thu Jan 5 11:45:02 GMT 2012 Rank 190 Aligned Residues 155 % Identity 12% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																							.																													.	.	.	.
Query SS confidence																																							.																													.	.	.	.
Query Sequence		R	W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	.	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	.	.	.	.	L	M	Q	A	G	T	H	P	D	Y
Query Conservation																																							.																													.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																.																													.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	.	.	.	.	.	.	.	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G	L
Template Known Secondary structure		S														T	.	.	.	.	.	.	.	T									T	T	S															T					S						S	S																	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.
Predicted Secondary structure																																																	.																							.	.	.	.
Query SS confidence																																																	.																							.	.	.	.
Query Sequence		Y	T	L	A	P	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	.	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	.	.	.	.	R	E	P	E	R	L
Query Conservation																																																	.																							.	.	.	.
Alig confidence																		.																															.																							.	.	.	.
Template Conservation																		.
Template Sequence		K	S	I	C	I	Y	G	V	D	I	I	I	A	T	P	G	.	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L
Template Known Secondary structure										S								.								T	T		S			T	T															T	T												S		S	S								S	S
Template Predicted Secondary structure																		.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	L	R	S	R	C	R	L	H	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	S	Y	L	K	D	P	M	I	V	Y	V
Template Known Secondary structure							S	S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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