Job Description P28631 Confidence 96.60% Date Thu Jan 5 11:45:02 GMT 2012 Rank 171 Aligned Residues 156 % Identity 8% Template c3fe2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5; PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60															.	.	.	.	.	.
Predicted Secondary structure																																							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	.	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	C	R	G	C	Q
Query Conservation																																							.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		E	P	T	A	I	Q	A	Q	G	W	P	V	A	L	S	.	.	.	.	.	.	.	G	L	D	M	V	G	V	A	Q	T	G	S	G	K	T	L	S	Y	L	L	P	A	I	V	H	I	N	H	Q	P	F	L	E	R	G	D	G	P	I	C	L	V	L	A	P	T	R	E	L	A	Q	Q	V	Q	Q	V	A	A
Template Known Secondary structure		S														T	.	.	.	.	.	.	.	T									T	T	S																T	S					T	T				S						S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.											.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																									.																		.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.																									.																		.
Query Sequence		L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	.	.	.	.	.	.	.	.	.	.	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	.	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	.	A	A	N	A	L	L	K	T	L	E	E
Query Conservation																		.	.	.	.	.	.	.	.	.	.																									.																		.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																									.																		.
Template Conservation
Template Sequence		E	Y	C	R	A	C	R	L	K	S	T	C	I	Y	G	G	A	P	K	G	P	Q	I	R	D	L	E	R	G	V	E	I	C	I	A	T	P	G	R	L	I	D	F	L	E	C	G	K	T	N	L	R	R	T	T	Y	L	V	L	D	E	A	D	R	M	L	D	M	G	F	E	P	Q	I	R	K	I	V	D	Q
Template Known Secondary structure							T	T								T	T	S											S			S															T	T	S				T	T							T	T							T	T											T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		P	P	A	E	T	W	F	F	L	A	T	.	.	.	.	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		I	R	P	D	R	Q	T	L	M	W	S	A	T	W	P	K	E	V	R	Q	L	A	E	D	F	L	K	D	Y	I	H	I	N	I
Template Known Secondary structure		S		T	T								S															S	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions