Job Description P28631 Confidence 98.15% Date Thu Jan 5 11:45:02 GMT 2012 Rank 97 Aligned Residues 176 % Identity 18% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		P	D	F	E	K	L	V	A	S	Y	Q	A	.	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T
Query Conservation														.
Alig confidence														.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	D	L	N	C	A	S	I	P	Q	E
Template Known Secondary structure																T	S		S								T	T	S	S																S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S	S		T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.																							.	.	.	.	.	.	.	190	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.												.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																						.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	.	.	.	.	.	.	.	.	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	.	.	.	.	.	.	.	.	.	.	.	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	.
Query Conservation																						.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence																						.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N
Template Known Secondary structure		T										S		S	S	S	S												T	T	T	S						T	G	G	G	S															S					B	T																S	S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
								148	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.													.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.													.	.											.	.								.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence		.	.	.	.	.	.													.	.											.	.								.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		.	.	.	.	.	.	P	E	R	L	L	A	T	L	R	S	R	C	.	.	R	L	H	Y	L	A	P	P	P	E	.	.	Q	Y	A	V	T	W	L	.	.	.	.	.	.	.	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	.	G	S	P	G	A	A	L	A	L
Query Conservation		.	.	.	.	.	.													.	.											.	.								.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence		.	.	.	.	.	.													.	.											.	.								.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation
Template Sequence		L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	W	K	G	N	V	R	E	L	K	N	L
Template Known Secondary structure								T	T	S	S									T	S								G	G	G	S	T	T																	T	T						B										T				T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		205	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		355	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions