Job Description P28631 Confidence 97.02% Date Thu Jan 5 11:45:02 GMT 2012 Rank 144 Aligned Residues 128 % Identity 14% Template c3dkpA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.																																.	.	.	.	.	.	.	.	50
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	L	S	R	Y	L	L	C
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		M	P	T	P	I	Q	M	Q	A	I	P	V	M	L	H	.	.	.	.	.	.	.	G	R	E	L	L	A	S	A	P	T	G	S	G	K	T	L	A	F	S	I	P	I	L	M	Q	L	K	Q	P	A	N	K	G	F	R	A	L	I	I	S	P	T	R	E	L	A	S	Q	I	H	R	E	L	I	K	I	S	E
Template Known Secondary structure		S														T	.	.	.	.	.	.	.	T									T	T	S																S			S	S	S								S	S															T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.
Predicted Secondary structure																		.	.	.																																																										.	.
Query SS confidence																		.	.	.																																																										.	.
Query Sequence		Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	.	.	.	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	.	.	A	A
Query Conservation																		.	.	.																																																										.	.
Alig confidence																		.	.	.																	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.
Template Sequence		G	T	G	F	R	I	H	M	I	H	K	A	A	V	A	A	K	K	F	G	P	K	S	S	K	K	F	D	I	L	V	T	T	P	N	.	.	.	.	.	.	.	.	.	R	L	I	Y	L	L	K	Q	D	P	P	G	I	D	L	A	S	V	E	W	L	V	V	D	E	S	D	K	L	F	E	D	G	G	F	R
Template Known Secondary structure		T	S															T	T	T	S	T	T	S													.	.	.	.	.	.	.	.	.								S	S	S		S				T	T							S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.										.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		126	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		N	A	L	L	K	T	L	E	E	.	P	P	A	E	T	W	F	F	L	A	T
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		D	Q	L	A	S	I	F	L	A	C	T	S	H	K	V	R	R	A	M	F	S
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions