Job Description P28631 Confidence 96.87% Date Thu Jan 5 11:45:02 GMT 2012 Rank 156 Aligned Residues 125 % Identity 10% Template c2xgjA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.
Template Sequence		L	D	P	F	Q	D	T	A	I	S	C	I	D	R	.	.	.	.	.	.	.	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M
Template Known Secondary structure																.	.	.	.	.	.	.	T									T	T	S																T	T								S	S																S
Template Predicted Secondary structure																.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
								71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																						.
Query SS confidence		.	.	.	.	.	.																																																						.
Query Sequence		.	.	.	.	.	.	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	.	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L
Query Conservation		.	.	.	.	.	.																																																						.
Alig confidence		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.									.	.																							.
Template Conservation																				.	.	.	.	.	.	.	.	.									.	.
Template Sequence		T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	.	.	.	.	.	.	.	.	.	I	L	R	S	M	L	Y	R	.	.	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y	V	F
Template Known Secondary structure			S	S					T	T		S								.	.	.	.	.	.	.	.	.									.	.	T		T	T	G	G	G								T	G	G	G	G	G		T	T	T											S		T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240										.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		144	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		292	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions