Return to main results Retrieve Phyre Job Id

Job DescriptionP28631
Confidence95.50%DateThu Jan 5 11:45:02 GMT 2012
Rank277Aligned Residues130
% Identity15%Templatec2v3cC_
PDB info PDB header:signaling proteinChain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20. ........30.........40........
Predicted Secondary structure 

........









...............................
Query SS confidence 













. . . . . . . .


























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  RPDFEKLVASYQAG. . . . . . . . RGHHALLIQALPGMGDDALIYALSRYL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation        
   
   ........ 
 

 

 
  
 

   
  

  
...............................
Alig confidence 













........


























...............................
Template Conservation    
  

   
             
 

 


  
 




 



      
 

 

 


 
 

 


   
   
Template Sequence  KIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIH
Template Known Secondary structure 

S






SSS




SSSSTT



S


TTGGGSSSS
Template Predicted Secondary structure 




























Template SS confidence 















































































   76...80.........90.........100.........110.........120.........130.........140.........150.....
 
   4950.........60.........70.........80.........90.........100.........110.........120.....
Predicted Secondary structure  ...









































Query SS confidence  . . .












































































Query Sequence  . . . LCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAA
Query Conservation  ... 
           
  
         
   
        
 

 

 
             

 

  

     
 
Alig confidence  ...





















..














....

























.






Template Conservation 


        

  
    
    ..  









   ....
  
  

  
     
 
 





.  

 
 
Template Sequence  VPIYGDETRTKSPVDIVKEGMEKFK. . KADVLIIDTAGRHKE. . . . EKGLLEEMKQIKEITNPDEIILVIDG. TIGQQAG
Template Known Secondary structure 



SSS

SSSTTTTS..S
S


S
SS....TTSSS

SG.GGGGG
Template Predicted Secondary structure 









..










....






.

Template SS confidence 















































































   156...160.........170.........180 .........190..... ....200.........210.........220. .......
 
   126...130.........140....
Predicted Secondary structure 




Query SS confidence 


















Query Sequence  NALLKTLEEPPAETWFFLA
Query Conservation 




 



      

 
Alig confidence 


















Template Conservation    
  
        




Template Sequence  IQAKAFKEAVGEIGSIIVT
Template Known Secondary structure  TTS
S
Template Predicted Secondary structure 




Template SS confidence 


















   229230.........240.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions