Job Description P28631 Confidence 98.96% Date Thu Jan 5 11:45:02 GMT 2012 Rank 79 Aligned Residues 272 % Identity 15% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	.	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	R	H	R	E	T	P
Template Known Secondary structure							T	T	G	G	G	T	S	S						.					B		T	T	S	S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T										T	T	T	S		S
Template Predicted Secondary structure																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
													82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																								.															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																								.															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	E	K	G	K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	.	T	D	A	A	A	N	A	L	L	K	T	L	E	E	.	P	P	A	E	T	W	F	F	L	A	T	R	E	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																								.															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																								.															.
Template Conservation
Template Sequence		Y	R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	R	I	N	Q	E	L	V	S	L	V	G	I	T	N	S	L
Template Known Secondary structure													S					S	S																T	T	S		S								T	T	T					S	T	T											G	G	G										S		S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		149				150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure			.	.	.											.	.																						.	.	.	.	.	.	.														.	.	.
Query SS confidence			.	.	.											.	.																						.	.	.	.	.	.	.														.	.	.
Query Sequence		E	.	.	.	R	L	L	A	T	L	R	S	R	C	.	.	R	L	H	Y	L	A	P	P	P	E	Q	Y	A	V	T	W	L	S	R	E	V	.	.	.	.	.	.	.	T	M	S	Q	D	A	L	L	A	A	L	R	L	.	.	.	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R
Query Conservation			.	.	.											.	.																						.	.	.	.	.	.	.														.	.	.
Alig confidence			.	.	.											.	.																						.	.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		G	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	P	Q	L	R	D	I	L	E	T	R	A	E	E	A	F	N	P	G	V	L	D	P	D	V	V	P	L	C	A	A	L	A	A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E
Template Known Secondary structure		T	T	S	S	S	S						T	T	T	T	S					B																				B		T	T	T	B		S	S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.						.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		E	T	L	C	Q	A	L	A	Y	S	V	P	S	G	D	W	Y	S	L	L	A	A	L	N	H	E	Q	A	P	A	R	L	H	W	L	A	T	L	L	M	D	A	L	K	R	H	H	G	A	A	Q	V	T	N	V	D	V	P	G	L	V	A	E	L	A	N	H	L	.	.	.	.	.	S	P	S	R	L	Q	A
Query Conservation																																																																						.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.
Template Conservation
Template Sequence		R	R	R	E	E	R	V	R	R	E	H	V	Y	S	A	R	A	E	I	E	R	D	R	V	S	E	V	V	R	T	L	P	L	H	A	K	L	V	L	L	S	I	M	M	L	E	D	G	G	R	P	A	S	T	G	E	I	Y	E	R	Y	K	E	L	T	S	T	L	G	L	E	H	V	T	L	R	R	V	S	G
Template Known Secondary structure			T	T		S		B																							S	S															S	S	S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	G	D	V	C	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	S	E	L	D	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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