Job Description P28631 Confidence 95.03% Date Thu Jan 5 11:45:02 GMT 2012 Rank 308 Aligned Residues 156 % Identity 10% Template c2oxcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx20; PDBTitle: human dead-box rna helicase ddx20, dead domain in complex2 with adp Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.											.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.
Query Sequence		R	W	Y	P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	.	.	.	.	.	.	.	.	.	.	R	G	C	Q	L	M	Q	A	G
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		R	P	S	P	V	Q	L	K	A	I	P	L	G	R	C	.	.	.	.	.	.	.	G	L	D	L	I	V	Q	A	K	S	G	T	G	K	T	C	V	F	S	T	I	A	L	D	S	L	V	L	E	N	L	S	T	Q	I	L	I	L	A	P	T	R	E	I	A	V	Q	I	H	S	V	I	T	A	I	G	I	K
Template Known Secondary structure		S														T	.	.	.	.	.	.	.	T									T	T	S	S															T	T	S		S								S	S															T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.											.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.												.																		.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.												.																		.	.
Query Sequence		T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T	L	G	V	D	A	V	R	E	.	.	.	.	.	.	.	.	.	.	V	T	E	K	L	N	E	H	A	R	L	.	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	.	.	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E
Query Conservation																										.	.	.	.	.	.	.	.	.	.												.																		.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.												.																		.	.
Template Conservation
Template Sequence		M	E	G	L	E	C	H	V	F	I	G	G	T	P	L	S	Q	D	K	T	R	L	K	K	C	H	I	A	V	G	S	P	G	R	I	K	Q	L	I	E	L	D	Y	L	N	P	G	S	I	R	L	F	I	L	D	E	A	D	K	L	L	E	E	G	S	F	Q	E	Q	I	N	W	I	Y	S	S	L	P	A	S
Template Known Secondary structure		S	T	T								T	T	S									T	T	S		S															T	T	S	S		G	G	G							S	S						S	T	T	S	S											S		S	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		139	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		T	W	F	F	L	A	T	.	.	.	.	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.
Template Conservation
Template Sequence		K	Q	M	L	A	V	S	A	T	Y	P	E	F	L	A	N	A	L	T	K	Y	M	R	D	P	T	F	V	R	L
Template Known Secondary structure									S											T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions