Job Description P28631 Confidence 100.00% Date Thu Jan 5 11:45:02 GMT 2012 Rank 3 Aligned Residues 285 % Identity 20% Template c2gnoA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase iii, gamma subunit-related protein; PDBTitle: crystal structure of a dna polymerase iii, gamma subunit-related2 protein (tm0771) from thermotoga maritima msb8 at 2.00 a resolution Resolution 2.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N	T	L	G
Query Conservation
Alig confidence															.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation															.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		Q	L	E	T	L	K	R	I	I	E	K	S	E	.	G	I	S	I	L	I	N	G	E	D	L	S	Y	P	R	E	V	S	L	E	L	P	E	Y	V	E	K	F	P	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	D	V	L	E	I	D	P	E	.	.	G	E	N	I	G
Template Known Secondary structure												T		S	.	S								S	S	S	S															T	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T							S	.	.	S	S		B
Template Predicted Secondary structure															.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																			.	.	.	.	60	.	.	.	.	.			.	.	.	.	70
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	D	I	R	T	I	K	D	F	L	N	Y	S	P	E	L	Y	T	R	K	Y	V	I	V	H	D	C	E	R	X	T	Q	Q	A	A	N	A	F	L	K	A	L	E	E	P	P	E	Y	A	V	I	V	L	N	T	R	R	W	H	Y	L	L	P	T	I	K	S	R	V	F	R	V	V	V	N	V	P	K	E
Template Known Secondary structure													T	S			S	S	S	S	S						T	T	G	G	G	B								T						S			T	T								S		G	G	G	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																				.
Query SS confidence									.	.	.	.	.	.																																																				.
Query Sequence		Q	Y	A	V	T	W	L	.	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	E	T	L	C	Q	A	L	A	Y	S	V	P	S	G	.	D	W	Y	S	L	L	A	A	L	N	H	E	Q	A	P
Query Conservation									.	.	.	.	.	.																																																				.
Alig confidence									.	.	.	.	.	.																																																				.
Template Conservation
Template Sequence		F	R	D	L	V	K	E	K	I	G	D	L	W	E	E	L	P	L	L	E	R	D	F	K	T	A	L	E	A	Y	K	L	G	A	E	K	L	S	G	L	X	E	S	L	K	V	L	E	T	E	K	L	L	K	K	V	L	S	K	G	L	E	G	Y	L	A	C	R	E	L	L	E	R	F	S	K	V	E	S	K
Template Known Secondary structure											T	T						G	G	G	G	T																										S						T	T	T	T	T		S																		S		G	G
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	H	W	L	A	T	L	L	M	D	A	L	K	R	H	H	G	A	A	Q	V	T	N	V	D	V	P	G	L	V	A	E	L	A	N	H	L	S	P	S	R	L	Q	A	I	L	G	D	V	C	H	I	R	E	Q	L	M	S	V	T	G	I	N	R	E	L	L	I	T	D	L	L	L	R	I	E	H
Query Conservation
Alig confidence												.	.	.	.																																															.	.
Template Conservation												.	.	.	.																																															.	.
Template Sequence		E	F	F	A	L	F	D	Q	V	T	.	.	.	.	N	T	I	T	G	K	D	A	F	L	L	I	Q	R	L	T	R	I	I	L	H	E	N	T	W	E	S	V	E	D	Q	K	S	V	S	F	L	D	S	I	L	R	V	K	I	A	.	.	N	L	N	N	K	L	T	L	X	N	I	L	A	I	H	R	E
Template Known Secondary structure		G										.	.	.	.			S		T																	T	S				S															T			G	G	.	.	G
Template Predicted Secondary structure												.	.	.	.																																															.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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