Job Description P28631 Confidence 99.95% Date Thu Jan 5 11:45:02 GMT 2012 Rank 9 Aligned Residues 292 % Identity 16% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N
Query Conservation
Alig confidence																					.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																					.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Sequence		Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	K	N	I	P	H	.	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	E	M	N	A	S	.	D	E	R
Template Known Secondary structure										G	G	G	T	T	T	T					.							T	T	S	S														T	T			T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	.	S	T	T
Template Predicted Secondary structure																					.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70																				.	.	.	.	.	.	.		.	.	80
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	D	V	V	R	H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	K	S	C	R	F	I	L	S	C	N	Y	V	S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P
Template Known Secondary structure		S	T	T	T	S	S									S			T	T	T										T	G	G	G	S							T	T	G	G	G	T	S	S	S	S	S	S								S		G	G	G	S						T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		167	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		P	P	E	Q	Y	A	V	T	W	L	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	E	T	L	C	Q	A	L	A	Y	S	V	P	S	G	D	W	Y	S	L	L	A	A	L	N	H	E	Q	A
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.
Template Conservation
Template Sequence		V	P	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	I	G	E	V	V	D	A	D	T	I	Y	Q	I	T	A	T	A	R	P	E	E	M	T	E	L	I	Q	T	A	L	K
Template Known Secondary structure																	T	T	T			B													T	T														S	S	S	S		B									T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	R	L	H	W	L	A	T	L	L	M	D	A	L	K	R	H	H	G	A	A	Q	V	T	N	V	D	V	P	G	L	V	A	E	L	A	N	H	L	S	P	S	R	L	Q	A	I	L	G	D	V	C	H	I	R	E	Q	L	M	S	V	T	G	I	N	R	E	L	L	I	T	D	L	L	L	R	I	E	H
Query Conservation
Alig confidence																																		.	.	.																											.	.
Template Conservation																																		.	.	.																											.	.
Template Sequence		G	N	F	M	E	A	R	E	L	L	D	R	L	M	V	E	Y	G	M	S	G	E	D	I	V	A	Q	L	F	R	E	I	.	.	.	I	S	M	P	I	K	D	S	L	K	V	Q	L	I	D	K	L	G	E	V	D	F	R	L	T	E	.	.	G	A	N	E	R	I	Q	L	D	A	Y	L	A	Y	L	S	T
Template Known Secondary structure		T																S																.	.	.		S	S		S																						.	.	T															T	T
Template Predicted Secondary structure																																		.	.	.																											.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		322	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	K
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions