Job Description P28631 Confidence 98.30% Date Thu Jan 5 11:45:02 GMT 2012 Rank 95 Aligned Residues 189 % Identity 13% Template c2a5yB_ PDB info PDB header:apoptosis Chain: B: PDB Molecule:ced-4; PDBTitle: structure of a ced-4/ced-9 complex Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.
Predicted Secondary structure															.	.																																																								.
Query SS confidence															.	.																																																								.
Query Sequence		R	P	D	F	E	K	L	V	A	S	Y	Q	A	.	.	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	.	Y	Y	T	L	A	P	E	K	G
Query Conservation															.	.																																																								.
Alig confidence															.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	H	V	D	R	V	I	K	K	L	D	E	M	C	D	L	D	S	F	F	L	F	L	H	G	R	A	G	S	G	K	S	V	I	A	S	Q	A	L	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Q	L	I	G	I	N	Y	D	S	I	V	W	L	K	D	S	G	T
Template Known Secondary structure																T	T	S	S	S								S	T	T	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	T	B	T	T	T	B	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																									.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.										.	.	.	.	.	.
Template Conservation																																																												.	.										.	.	.	.	.	.
Template Sequence		A	P	K	S	T	F	D	L	F	T	D	I	L	L	M	L	K	S	E	D	D	L	L	N	F	P	S	V	E	H	V	T	S	V	V	L	K	R	M	I	C	N	A	L	I	D	R	P	N	T	L	F	V	F	D	D	V	V	.	.	Q	E	E	T	I	R	W	A	Q	.	.	.	.	.	.	E	L	R	L	R
Template Known Secondary structure		S	T	T														T	T	T	S			T	T					T	T															T	T	S	T	T										.	.										.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																												.	.										.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.							.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		F	F	L	A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E	Q	Y	A	V	T	W	L	S	R	E	.	.	.	.	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	E	T	L
Query Conservation																																									.	.	.	.
Alig confidence										.																															.	.	.	.
Template Conservation										.
Template Sequence		C	L	V	T	T	R	D	V	.	E	I	S	N	A	A	S	Q	T	C	E	F	I	E	V	T	S	L	E	I	D	E	C	Y	D	F	L	E	A	Y	G	M	P	M	P	E	K	E	E	D	V	L	N	K	T	I	E	L	S	S	G	N	P	A	T	L	M	M	F	F	K	S	C	E	P	K	T	F	E	K	M
Template Known Secondary structure							S	B	G	.	G	G	G	G	G			S																						T	S																			T	T										T	T			S	S	S
Template Predicted Secondary structure										.
Template SS confidence
		268	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		217	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	A	L	A	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Q	L	N	N	K	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions