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Job DescriptionP28631
Confidence100.00%DateThu Jan 5 11:45:02 GMT 2012
Rank2Aligned Residues320
% Identity24%Templatec1xxhB_
PDB info PDB header:transferaseChain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex
Resolution3.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80......
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Query Sequence  LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN
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Template Sequence  QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR. .
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   21........30.........40.........50.........60.........70.........80.........90........
 
   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP
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Template Sequence  . TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA
Template Known Secondary structure  .TTTTT


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TGGG

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   99100.........110.........120.........130.........140.........150.........160.........170.......
 
   167..170...... ...180.........190.........200.........210.... .....220.....
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Query Sequence  PPEQYAVTWL. . . . . SREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARE. . . . . . . . . . . . . . . . TLCQALAYSVP
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Template Sequence  LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV
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TTT

B
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   178.180.........190.........200.........210.........220.........230.........240.........250.......
 
   226...230...... ...240.........250.........260.... .....270.........280.........290........
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Query Sequence  SGDWYSLLAAL. . . . . NHEQAPARLHWLATLLMDALKRHHGAAQ. . VTNVDVPGLVAELANHLSPSRLQAILGDVCHIRE
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Template Sequence  EANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRK
Template Known Secondary structure  TT



TTTSS



GGGTTTS
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   258.260.........270.........280.........290.........300.........310.........320.........330.......
 
   299300.........310.........320.........330..
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Query Sequence  QLMSVTGINRELLITDLLLRIEHYLQPGVVLPVP
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Template Sequence  ELPY. . APDRRMGVEMTLLRALAF. HPRMPLPEP
Template Known Secondary structure  GGG..SSST.
SSS




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   338.340. ........350......... 360........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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