Job Description P28631 Confidence 100.00% Date Thu Jan 5 11:45:02 GMT 2012 Rank 2 Aligned Residues 320 % Identity 24% Template c1xxhB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii subunit gamma; PDBTitle: atpgs bound e. coli clamp loader complex Resolution 3.45 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		Q	E	H	V	L	T	A	L	A	N	G	L	S	L	G	R	I	H	H	A	Y	L	F	S	G	T	R	G	V	G	K	T	S	I	A	R	L	L	A	K	G	L	N	C	E	T	G	I	T	A	T	P	C	G	V	C	D	N	C	R	E	I	E	Q	G	R	F	V	D	L	I	E	I	D	A	A	S	R	.	.
Template Known Secondary structure															T	T				S							S	T	T	S	S													S		T	T		S		S	S			S		S									T			T	T						S	S		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	T	K	V	E	D	T	R	D	L	L	D	N	V	Q	Y	A	P	A	R	G	R	F	K	V	Y	L	I	D	E	V	H	M	L	S	R	H	S	F	N	A	L	L	K	T	L	E	E	P	P	E	H	V	K	F	L	L	A	T	T	D	P	Q	K	L	P	V	T	I	L	S	R	C	L	Q	F	H	L	K	A
Template Known Secondary structure		.	T	T	T	T								T				S		S	S	S	S								T	G	G	G															S			T	T								S		T	T	S	S							T	S
Template Predicted Secondary structure		.
Template SS confidence
			99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	E	Q	Y	A	V	T	W	L	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	C	Q	A	L	A	Y	S	V	P
Query Conservation												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	V	E	Q	I	R	H	Q	L	E	H	I	L	N	E	E	H	I	A	H	E	P	R	A	L	Q	L	L	A	R	A	A	E	G	S	L	R	D	A	L	S	L	T	D	Q	A	I	A	S	G	D	G	Q	V	S	T	Q	A	V	S	A	M	L	G	T	L	D	D	D	Q	A	L	S	L	V	E	A	M	V
Template Known Secondary structure																	T	T	T			B												S		S																	T	T		B									S			S	S		T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																													.	.
Query SS confidence													.	.	.	.	.																													.	.
Query Sequence		S	G	D	W	Y	S	L	L	A	A	L	.	.	.	.	.	N	H	E	Q	A	P	A	R	L	H	W	L	A	T	L	L	M	D	A	L	K	R	H	H	G	A	A	Q	.	.	V	T	N	V	D	V	P	G	L	V	A	E	L	A	N	H	L	S	P	S	R	L	Q	A	I	L	G	D	V	C	H	I	R	E
Query Conservation													.	.	.	.	.																													.	.
Alig confidence													.	.	.	.	.																													.	.
Template Conservation
Template Sequence		E	A	N	G	E	R	V	M	A	L	I	N	E	A	A	A	R	G	I	E	W	E	A	L	L	V	E	M	L	G	L	L	H	R	I	A	M	V	Q	L	S	P	A	A	L	G	N	D	M	A	A	I	E	L	R	M	R	E	L	A	R	T	I	P	P	T	D	I	Q	L	Y	Y	Q	T	L	L	I	G	R	K
Template Known Secondary structure		T	T																			T																		T	T	S	S					G	G	G	T	T	T											S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	M	S	V	T	G	I	N	R	E	L	L	I	T	D	L	L	L	R	I	E	H	Y	L	Q	P	G	V	V	L	P	V	P
Query Conservation
Alig confidence						.	.																			.
Template Conservation						.	.																			.
Template Sequence		E	L	P	Y	.	.	A	P	D	R	R	M	G	V	E	M	T	L	L	R	A	L	A	F	.	H	P	R	M	P	L	P	E	P
Template Known Secondary structure			G	G	G	.	.	S	S	S															T	.		S	S	S
Template Predicted Secondary structure						.	.																			.
Template SS confidence
		338	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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